KEGG   Oncorhynchus gorbuscha (pink salmon): 124040677
Entry
124040677         CDS       T07892                                 
Name
(RefSeq) LOW QUALITY PROTEIN: roquin-1-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ogo03000]
    124040677
   04121 Ubiquitin system [BR:ogo04121]
    124040677
Transcription factors [BR:ogo03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    124040677
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124040677
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-C3HC4_4 zf-RING_2 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 zf_CCCH_4 Prok-RING_4 FYVE NS3_helicase_C zf-RING_6
Other DBs
NCBI-GeneID: 124040677
NCBI-ProteinID: XP_046213709
LinkDB
Position
LG08:complement(64028743..64059151)
AA seq 1123 aa
MPVQAPQWTEFLLCPICTQMFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD
IEQLPVNTALLQLVGGQVPKVQPVALITSPEDSQHYEEARQCVEELALYLKPLSNNRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGLALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNQLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSSSLLSDDCLPLDMGVTRKTS
PLTNGSAGHPMPQLITRGTDAVTYDLLCKPKMDGGCSSSPGSPPDSLDSGPKQGFLQPPL
AMGHPRGSGDLMPKQMPVGVMPRGPQMYPQQLPDMYYSDSRPLPSASQYEPSQYPQENQH
VNVSPSVLQDTPTSSPPQYSTQRYIRNLPTPSEAAGPPYQDPYSGYGPPERPYPAPHSGT
PYSYLPHYDTRGRHGPYPGPQPYPTQRDDMVRMSPAPLDMPPNHHYQQEQVARERYPPEG
YYPTGAQPQSIRSNVREQYRRSSQPSLDYLHHRRKELMAQLEERKVISPPPFAASPTLPH
AFPSDYPPEYGEESSKAFGKCREPDYAGQYSPWSCDTIGSYIVTKDAKPKDIMTPGAMEM
MNVDGKGLRGEPSMEAQARQGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTDYQTTGPVQ
AMASAQGPKHMAAEFSYGHHGGWGSASYPSHQTGSSSQGHFSEKLSMPAQDREHLKIELQ
QVNQQITQQTQTHGMEREVSALAAQPSQPCQNQGQQGKWPGPVGVSSNAALVSSEQLSME
LHQVEREIGKRTCRMDMDSQVAHEVQYKMKAAQNGQQDHKTQLEEIALALGEVSNGSSGL
GQDGGVGGAMLSLTNKASSLSLCSEPGPGVSELQKNGMVHSCS
NT seq 3372 nt   +upstreamnt  +downstreamnt
atgcctgtgcaagccccacaatggacggagttcctgctgtgtcccatctgcacgcagatg
ttcgaggagacggtgcggcggcccatctcgctgggctgtggccacaccgtctgcaagatg
tgcctgaacaagctccaccgcaaggcctgccccttcgaccagacagccatcgccaccgac
atcgagcagctgccggtaaacacagccctactgcagcttgtggggggacaggttcccaag
gttcagccggtggccctgatcaccagcccagaggactcgcagcactatgaggaggctagg
cagtgtgtagaggagctggccctatacctcaaaccccttagcaacaacagaggggtgggt
ctaagcagcacagcccagagcatgctgagtcggcccatgcagaggaagctggtgaccctg
gtccactgtcagctggtggaggaggagggccgtgtgcgggccatgagggcagccaggtct
ctgggggagcgcacggtcacagagctcatcctacaacaccagaacccccagcaattgtca
tccaatttgtgggccgccgtccgggcccggggatgccagttcttgggcccagccatgcag
gaggaggctctgaagctggtgctgctggctctggaggatggcttggccctgtccaggaag
gttctggtgctgtttgtggtccagaggttagagccacgcttcccccaggcctccaagacc
agcataggccacgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaagcgc
gacgaggactcgtccctgatgcagctgaaagaggagttcaggacgtatgaggcactgcgg
cgcgaacacgactcccagattgtgcagatcgccatggagggtggcctccgcatcgctccc
gaccagtggtcctccctgctctatggggaccagtcccacaagtcccacatgcagtccatc
atcgacaagttgcaaacgccagcgtcgtttgcccagagcgttcaggagctgaccatcgcc
ttgcagaggacgggtgaccccgccaaccttaatcaactccgaccacatctggaactactg
gccaacatcgaccctagccccgacgccccccctcccacgtgggagcagctggagaagggt
ctggtggcggtgaagacggtggtccacggcctggtggacttcatccagaaccacagcaag
aagggagccgacccacaacagcctccccagcacagtaaatacaagacatacatgtgtcgg
gacatgaagcagaaggggggctgtcccagaggagccagctgtaccttcgcccactctcag
gaggagctggagaagtaccgtaagatgaacaagcgtttggcggctcgcctccctggctca
tccagcctgctgtcggatgactgtctccctctggacatgggggtgacccggaaaacctcg
ccccttaccaacggctcagctggacaccccatgccccagctcatcacccgcggcacggac
gccgtgacctacgacctgttgtgcaagcccaagatggacggcgggtgcagcagctccccg
ggatcgccccctgactctctggattcagggcccaaacaagggttccttcagcctcccctt
gccatgggccaccccagggggtcaggcgacctcatgcccaaacagatgcccgtaggtgtg
atgccccgggggcctcagatgtacccccagcagctgcctgacatgtactactccgactca
cgcccactgccctccgcctcccagtacgagccttcgcagtacccccaagaaaatcaacat
gtcaatgtgtccccctctgtcctccaggatacccctaccagcagccccccccagtactcc
acccagcgctacatccgaaacctccctacccccagcgaggccgctggacccccctaccag
gacccctattctggctatggccctcccgagcgcccttacccagctccccactccggcacc
ccctactcctaccttccccactatgacacccggggccgccacggcccttaccctggcccc
cagccatacccgacgcagagggacgacatggtccggatgagccctgctcccctggacatg
ccccctaaccaccactaccaacaggagcaggtggccagggagaggtaccccccagagggg
tactacccaactggggcccagcctcaatccataaggtccaacgtcagggagcagtacaga
cgctcctcccagcccagcctggactacctgcaccatcgccgcaaggagctgatggcccaa
ctagaagagcggaaggtcatctcccctccaccctttgctgcctcccccacccttccccat
gcctttcctagtgactaccccccagagtatggggaggaaagctccaaagcctttgggaag
tgcagggagccggactacgctggccagtattctccctggtcctgtgacactatcggctcc
tatattgtcaccaaggacgccaagcccaaagacatcatgacgcccggcgccatggagatg
atgaatgtggatggtaaaggtcttcggggggagccctccatggaggcccaggccaggcag
ggggcggaggtcaaagacgacgaccccatcatccccttcggcccccagcccaccgtgtcg
cgcttcggggccatctcacgcacctccaagacagactaccagacgacaggccccgtgcag
gccatggcatccgcccagggacccaagcacatggccgcggagttctcctatgggcaccac
ggaggctggggcagcgcctcctacccctcccaccagactggctcctcctctcagggacac
ttcagtgaaaagctgtctatgccagctcaggacagagagcatctgaagattgagctccaa
caggtcaaccagcagatcacccaacagacccagacccacggcatggagagggaggtcagt
gccctggcggcccagccctcccaaccatgtcagaaccagggccagcaggggaagtggccc
ggtccagtgggggtttccagcaatgctgccttggtgtctagcgagcagctcagcatggag
ctgcaccaggttgagagggagattggcaagaggacctgccggatggacatggacagtcag
gtggctcatgaagtccagtacaagatgaaggctgcacagaatggccagcaggaccacaag
acccagctggaggagattgctctggccctcggtgaggtatctaatggctccagcggtcta
ggtcaggacggtggtgtgggcggagccatgttgtcactgaccaataaagcgtcttcgctc
agcctgtgttctgagccggggcctggggtctcagagctgcagaagaatggtatggtccat
tcctgctcctag

DBGET integrated database retrieval system