Oncorhynchus gorbuscha (pink salmon): 124041312
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Entry
124041312 CDS
T07892
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124041312
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124041312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2637
Motif
Other DBs
NCBI-GeneID:
124041312
NCBI-ProteinID:
XP_046214723
LinkDB
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Position
LG08:20579964..20700217
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AA seq
739 aa
AA seq
DB search
MEEDQKWGVAGRSVGRTCSEHPCKKRFWRNWKDLSGITVGIVFSVLSLGFCILVYLRTSE
LQSRILNLEKQRDTQLSAWISLEQVEPVIFGRIDQILEEKLAARLPKTREAREAPHSCVC
PPGRPGSRGKRGRNGDPGPPGPPGRSGFPGDKGTMGIPGRLGLKGYAGVKGAPGEPGLSI
IGPRGSPGQPGTRGFPGFPGPIGLDGKPGQNGLKGDLGQRGPKGVPGESGQKGEKGVCGD
YSHRKRRIVQPCVGGLATQMLPITVRNMPQINPLILKRLKQGEPGAQGPPGPPGPSGTPG
LNGASGPPGKPGEPGKPGKDPRLLPGMKGEPGMPGIKGDVGPAGPEGPKGLKGDLGLRGE
PGFPGTPGRKGQAGTPGTPGIHGKRGYRGDKGEPSAAGTGIKGEPGTPGLPGLSGFKGDK
GDQGVKGEEGSDGPAGPRGPPGAAGEPGKSEIINNENDIRNVPLMGPPGLPGPQGGPGTP
GTKGEVGLPGPSGLDGEKGPRGKPGEAGPVGPAGPEGPRGEGGLMGFSGTKGDKGDMGPS
GSPGLDGPTGEKGVSGPPGPIGLPGAMGQKGESGDKGGMSDMVYGPPGPPGPQGPVGPAG
PEGLGGPKGEPGIGIRGEKGASGSKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPVGVAGP
AGLKGDRGYKGDSGEPGPIGPQGIPGLVGPQGFKGNRGERGKKGNRGTKGDKGDQGAPGL
DAPCPLGDDGLPVSGCWNK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatcaaaagtggggagttgctggtagaagtgtaggcaggacttgcagtgag
cacccttgcaaaaaacgcttttggaggaattggaaagatttgtcaggtataactgtcggc
atcgtattctctgtattgtctcttggattttgcattctcgtttatctgagaacctcggag
cttcagtccaggatcctaaacttggaaaaacagagagatacgcagctctccgcgtggatc
tcactcgagcaggtggaaccagttatctttggccgaatagatcagattctggaagagaaa
ttggcggctcgacttcccaaaacacgagaggccagagaagcaccccatagctgcgtctgt
ccaccagggcgtcctgggtcgaggggaaagagaggtcgcaatggtgatccaggacctcct
ggtccacccggacgatcaggctttccgggtgacaaaggaacaatgggaattcctggaaga
ttggggttaaaaggatacgcaggggtgaagggagcgccaggggagccaggcctgtccatc
attgggccacgaggatctcctggacagccaggaactagaggcttcccaggcttcccgggt
ccgattgggttggacggcaagcccgggcagaacggcttgaaaggagacttgggtcaacgt
ggtcccaaaggagttccaggtgaatctggtcagaaaggagaaaagggcgtatgtggagac
tacagtcacaggaagcggcgtattgtacagccctgtgttggaggattggccacacagatg
ttgcccatcaccgtgcgcaacatgcctcaaataaaccctctaatcctaaagcgcctcaag
cagggtgagcctggagctcagggcccaccaggacctcccgggccctcagggacccccgga
ctgaatggtgcaagtggaccaccgggtaaacccggtgaaccaggaaaacctggaaaagat
ccaaggctcctgccagggatgaagggtgagccaggcatgccaggaataaagggtgatgtt
ggccctgctggtcccgaaggccccaagggactgaagggagacctagggctgaggggagag
ccaggttttccaggcactcctggaagaaagggtcaagctggtacccctggaacacctggc
attcatggaaagaggggctacaggggtgacaagggtgaacccagcgcagcggggactggc
atcaaaggagaaccagggacaccaggacttccaggcctatcaggattcaagggtgacaaa
ggcgaccaaggtgtcaagggggaagaaggatctgatggcccagctggaccaagaggtcct
ccaggtgcagcaggggagccaggaaaatcagaaatcatcaacaatgaaaatgatattcgg
aatgtacctttgatgggcccacctggactacctggccctcaagggggccccggaacacca
ggaacaaagggtgaagttggccttccaggcccttcaggtcttgacggagagaagggtcct
cgggggaagcctggagaggcaggtcctgttggcccagccggccctgaaggccccagaggg
gaggggggcctgatgggtttctccggaaccaaaggagataagggggacatgggcccatct
ggatcacctggtttagatggccctactggtgaaaagggggtttctgggcctcctggtccc
attggattaccaggcgcaatgggtcagaagggtgagtccggagataagggaggaatgtca
gacatggtatacgggcctccaggtcctccaggaccccaaggaccagttggccctgcggga
cctgaaggactgggagggccaaagggggagccaggcataggcatacggggagagaaggga
gcatctggttcgaaaggcgataaaggggacaggggtcatcttgggcttcctggggctcat
ggtttagacggcaggcctggtccagtgggcctgataggaccagttggtgtggcagggcca
gcaggactgaagggagatagaggttacaagggagattcaggagaaccaggaccaattggg
cctcaaggcatccctggtttagtaggaccacaaggattcaaagggaaccggggagagagg
ggcaagaaaggcaacaggggaactaaaggggataagggggaccaaggagcacccggatta
gatgccccctgtccattgggggatgatggcttaccagtatcagggtgttggaataaataa
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