Oncorhynchus gorbuscha (pink salmon): 124041336
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Entry
124041336 CDS
T07892
Symbol
nfkb2
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04010
MAPK signaling pathway
ogo04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124041336 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
124041336 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124041336 (nfkb2)
Transcription factors [BR:
ogo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
124041336 (nfkb2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
124041336
NCBI-ProteinID:
XP_046214774
LinkDB
All DBs
Position
LG08:21727193..21738875
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AA seq
905 aa
AA seq
DB search
MSEALRMDEAQYSMKMIENELMMNLSTYEFMPPVEVKSEPYVPETVHGPYIQILEEPKQR
GFRFRYECEGPSHGGLPGASSERNRRTYPTVKVSNYVGIARVEVQLVTHSDPPQVHAHSL
VGRHCCTESGKCSVDVGPNELTAQFSNLGILHVTKKGVGEVLFKRLRDEKRRQRGQHYHF
TDAEEQAILREANELGRIMDLNIVRLKFTAYLQDSNGGFSRALKPVVSNPIFDSKSPNAS
NLKISRMDKTSGSVLGGDEIFLLCDKVQKDDIEIRFYEEDGSWEAFGDFSPTDVHKQYAI
VFKTPPYHSTEIDRSVTVFLQLKRKKVGDCSDPKQFTYVPQIQDKEEVQRKKQKPLPYND
PWRGPLGGAGGAGRGAGGPGGAGFQFNQQMNGSGWMGGGFTCFGGGGAQMTGTTAQAEGT
QQQAGGTAGQTPGQMPGQTASPLQQQLFQIAATLQSRASRMTKQTAVALLQYCTTGDVRV
LLAMQRHLCGVQDENGDTPLHLAIIHQQSAVIQQLVHTLLTIQQRKVLDKLNHLSQTPLH
LAVITRQVKVVDVLLRAGADPTLLDRDGRTPLHLAALAGDDVTLRVLLGHLGERYNHLVN
MADYHGLHPLHLAVRKGGERRLRLLVGSGAKINDPERGSGCSALHLAVRENLLKVACTLI
TELKADVNMCTFGGNTPLHLAASQGSPTLCSMLIAAGADKNLENDEPLFFSSSSSDEEQE
DGPIRDFSELQIQQQPTIPPPLGKEQVNPRKRPATGHTPFDLTKCQKVRDLLDTRPKSSQ
HSSKKPKPNSMDESEQLDSETLHKLCELLSLGDVPWRQLAEKLNMLSLAHLYQESPSPCY
KLLENYKLGGGPVERLVEALQSLGLTEGVRLLRRAELREDKQNTDQTVDSGFGSQPMDEP
ALANQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagcactaagaatggatgaagctcagtacagcatgaaaatgattgaaaatgag
ctgatgatgaacttatcgacttatgagttcatgccacctgtggaggtcaagagtgagccc
tacgtacccgagaccgttcatggaccctacattcaaatactcgaggagcccaaacagaga
ggcttcagattccgctatgagtgcgagggtccgtcccacggtgggctcccaggggcctcc
agcgagaggaacaggagaacctatcccactgtcaaggtgtctaactatgtggggatagcc
agggtagaggtgcagctggtgacccactctgaccccccccaggtccacgctcacagtctg
gtggggaggcactgctgcacggaaagtggaaaatgcagtgtggatgtgggccccaatgaa
ctcacagcacagttcagtaacctgggcatcctccatgtcacaaagaaaggggtgggggaa
gtgttgttcaagagactgagagacgagaagaggagacaaagggggcagcactaccatttt
actgatgcagaggaacaagccatattgagagaagccaacgagctgggcaggatcatggac
ctgaacatagtgaggttaaagttcacggcctacctccaggacagtaacggagggttctct
agggccctgaagccagtggtctccaatcccatctttgacagcaagtcacccaacgcttcc
aacctgaaaatctcccgtatggataagacctctgggtctgtgctgggaggggatgagatc
ttcctactgtgtgacaaagtacaaaaagatgatattgagatccgcttctacgaggaggat
ggaagctgggaggcctttggtgacttctctccaactgatgtccacaagcagtatgccatc
gtgtttaagacacccccgtaccacagcacagagatcgatcgttcagtcactgtgttcctc
cagttgaaaaggaagaaagtgggagactgcagcgatcccaagcagttcacctacgttcct
caaattcaagataaagaggaggttcagcgtaagaagcagaagcccctcccctataatgac
ccatggagagggcctttgggaggggctgggggggcagggagaggtgccggaggaccagga
ggagcaggattccagtttaaccagcagatgaatggatcagggtggatggggggtggattc
acttgttttgggggtggtggagcccagatgacaggcaccactgcccaggctgagggtacc
cagcagcaagctggagggacggccggacagacgccaggacagatgccaggacagacagcc
tcaccactacaacagcagctcttccagattgctgctactctccagagcagggcctctcgg
atgaccaagcagacagctgtggctctcctacagtactgcaccactggggacgtccgggtc
cttctggcaatgcagagacacctgtgtggggtccaggatgaaaacggagacacgcctttg
cacctggccatcattcaccagcagtcagctgtgatccagcagctggttcatacactcctc
accatccagcaacgcaaagtcctcgacaagctcaaccacctcagccagactcctctccat
ctggcggtgatcaccaggcaggtgaaggtggtggatgttctcctgagggccggggctgac
cccaccctgctggaccgggacggccggacccccctgcacctggcagcgctggccggggac
gacgtcacactcagggtcctcctggggcacctaggagaacgttacaaccacctggtcaac
atggccgactatcatggtctccatcctctccacctggctgttcgtaagggtggagagcgc
cgtctacgtctgctggtggggagcggggctaagatcaacgaccccgagcgggggagtgga
tgctccgccctccacctggctgttagagagaacctcttgaaagtggcctgcactctcatc
acagagctgaaagcagatgtaaacatgtgtacgtttggggggaacactcctctccatctg
gccgccagtcagggctcccccactctctgctccatgctcattgctgcaggagccgataag
aatctggagaatgatgagccgctcttcttcagctcctcttcctcagatgaggagcaagag
gatggaccaataagagatttcagtgagttacagatccaacagcaaccaaccatcccacca
ccgttggggaaagaacaagtcaaccctcgtaagagaccagcaaccggacatacacccttt
gaccttactaaatgtcaaaaggtgagagaccttctagacaccagacccaagtccagccaa
cactcaagtaaaaagcctaaaccgaacagcatggacgaaagtgagcagctagacagtgag
acgctccataaactgtgcgagctcctcagtctgggcgatgtgccctggagacagctggca
gagaaactcaacatgctctccctggcacacctgtaccaggagagtccctctccctgctac
aaactgctggagaattacaagttgggtggcggtccagtggaacgactggtggaggcgctg
cagtctctgggtctgactgaaggagtgcgactgctgagacgggctgagctgagagaggac
aaacagaacacagatcagacagtggacagcggctttgggagtcagccaatggatgagcca
gccttggccaaccagtga
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