Oncorhynchus gorbuscha (pink salmon): 124041449
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Entry
124041449 CDS
T07892
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124041449 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
124041449 (herc4)
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
124041449 (herc4)
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
HECT type E3
124041449 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Glyco_hydro_129
DUF4980
Motif
Other DBs
NCBI-GeneID:
124041449
NCBI-ProteinID:
XP_046214995
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All DBs
Position
LG08:complement(28341046..28364158)
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AA seq
1052 aa
AA seq
DB search
MLCWGNASFGQLGLGGIDEEIVVEPRKCDFFHGKQVCDIGCGRRHTTFLLGDGTVYTCGC
NDIGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVFAWGLATDGQLGLAN
FEECVRVPRNIKSLSDVEIAQVACGYRHSHALSRGGQVYSWGQNRYGQLGLGVAGQGIST
PQVIQSLQGIPFIQISAGGAHSFALTFSGAVFGWGRNKFGQLGLNDNNDRYYPAQLKSLR
TQRVSYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNTTNHEINPRKVFELMGNVVTQIS
CGRQHTLAFIPSSGKMDSFGLGGNGQLGTRSTSNRNSPAPVKGPWVAYNGPTPTIADMEQ
GCCVKRIYAGGDQSFAHCYTPQNPLVPDDIRIPDPRRHICTLSADLTQRWLNHYTHGRLP
QEISNEIDLVFSSASCLNGSFLSGSHPDHYNTSSKCSGVDMNMARLLFHRVVQHDYPEVA
QQIAASLEKNLIPRLSSSPPDIEALRLYLTLPECPLFSDPNTYVTLAIPFAKALISLKEA
PLKVLDPGNWWSQFEAPVFQRLVELYKVVVVYLLKMHKVGVPHSEQRVFTCFLDTALKLL
EILHAVNERAGHIIQYDKFYIHELDDLIDIRNDYITWIQQQMYSMAHDSAVTLCKYPFVF
DAQAKTTLLQTDAVIQMQMAVDQAQRQNFSSMFLPVVESVNPCLILIVRRENIVGDTMDV
LRKSKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEESRLIWFA
NKTFEDIDLFHLTGVICGLAIYNLTIVDLHFPVALYKKLLKRNPTLDDLKELMPDVGRSL
QQLLDYTDDDVEDTFCLNFTVTVENFGATEVLELVPNGMDICVDNSNRPEFVSAYVDYIF
NKSVAALFESFFAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWKELEKSTEYKGEYWAE
NPTIKFFWEVFHDLSLEKKKLFLLFLTGSDRIPILGMKSLKLVIQPTGGGEHYLPVAHTC
FNLLDLPKYSSRETLQNKLLQAIDHNQGFNLA
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgttggggaaatgcttccttcggtcagctaggtttgggcgggatcgatgaggag
attgtggtggagccccggaaatgtgatttctttcatgggaagcaggtgtgtgatatcgga
tgtggccgacggcacaccacatttctactgggagacgggactgtgtacacctgtggctgc
aatgacattgggcagctgggccacgagaagtctcgaaagaaaccagagcaggttgtggca
ctagatgcacagaacattgtggcagtgtcatgtggggaggcccatacacttgcactgaat
gacaaaggacaagtgtttgcatggggcttggccacagatggacagctgggccttgcaaac
ttcgaagaatgtgtacgtgtgcccagaaacatcaagagtttatcagatgtagaaattgct
caggtagcctgtggatatcggcactcccatgctctgtctagaggaggtcaagtctattca
tggggacaaaaccgatacggacaactagggctgggagtagctggacaaggcatctctact
ccccaagtcatccagtctttacaggggattcccttcatccagatctcagcagggggtgct
cacagctttgccctcacattctcaggggccgtatttggctgggggcgcaacaagtttggg
caactcggcctcaatgacaacaatgatcggtattatccagcccagctcaagtccctcagg
acacagagggttagctacatctgctgtggggaggaccacactgccgcacttacaaaggaa
ggaggtgtgtttacatttggagcaggagggtatggccagcttggacataacactacaaac
catgagatcaaccccaggaaggtgtttgagctcatgggaaatgtagtcacacagatatcc
tgtggaagacagcacactctggccttcatcccctcctctggaaagatggattcatttggg
ctgggagggaacgggcagctcggtacacgctccacatccaacaggaacagccctgcccca
gtcaaaggcccctgggtggcctacaatggcccgacgcccacaatcgcagacatggagcag
ggctgctgtgttaagaggatctatgctggaggggaccagagctttgcccactgttacact
ccccagaaccctctggtgcctgacgacatcagaataccagatcccagaagacacatatgc
accttatctgctgatctcactcagagatggctgaaccattatacacacggaagactccca
caagagatttccaacgagattgatcttgtgttttcctctgcaagttgcctcaatggaagc
tttctctctggcagccatccagatcactacaacacgagcagtaaatgctcaggggtggac
atgaacatggctcgcctcttgtttcatagagtcgttcaacatgactatccagaagttgca
cagcagattgcagccagtctggaaaagaacctgattcccagactaagcagctcccctcca
gacatcgaggcgctgagactctacctcaccctgccagagtgtcctctcttcagcgaccca
aacacatatgtgactctggccatcccttttgccaaggcactcatcagtctgaaagaggct
ccactgaaggtgcttgatccaggcaactggtggtctcaattcgaagccccagtcttccag
aggcttgtggagctgtataaggtggtggtggtttacctgctgaagatgcacaaggtggga
gtcccccactcagagcagagggtcttcacctgcttcctggacacggcactcaagcttctg
gagatcctgcacgctgtgaacgaaagagccggacatatcatacagtacgacaaattctac
attcacgagttggatgacctgatagacatccgaaacgactacatcacatggattcaacag
cagatgtactctatggctcatgacagtgcggtcaccctctgtaagtacccctttgtgttt
gatgcccaggcgaagaccaccctgcttcaaactgatgctgttattcaaatgcagatggca
gtggaccaggcacagcggcaaaacttcagctccatgttccttcccgtggtggagtctgtt
aacccctgcctcatcctcattgtgaggagggagaacatcgtcggggacaccatggatgtc
ctcaggaagtccaagaacgttgactacaagaaacctctgaaggtgatctttgttggagaa
gaggcggtagatgcaggtggtgtgcggaaggagttcttccttctcatcatgagagagctc
ctggaccccaaatacggcatgttccgatactacgaggagtccaggctgatctggtttgca
aacaagacgtttgaggacattgacctgttccacctcaccggggtcatctgtgggctggcc
atctacaacctcaccatcgtggacctccacttcccagtggccctgtacaagaagctgctg
aagaggaaccccacgttggatgatcttaaggagctgatgcctgatgtggggaggagtctg
cagcagttactagactacacagacgatgatgttgaagacacattctgcttgaacttcacc
gttacagtggaaaactttggcgccacagaggtcttagaactggttccaaatggcatggat
atctgtgttgacaactcaaacaggcctgagtttgtctctgcatacgtggactacatcttc
aataaatcagtggcagcgcttttcgagtcctttttcgcaggcttccacaaagtgtgtggt
ggcaaagtcctggagctgttccagcccaacgaactgcaggccatggtcattggcaacacc
aactacgattggaaagagcttgaaaagagcactgagtataaaggagagtattgggctgaa
aatccaaccattaagttcttctgggaggtgttccacgatctctctttggagaagaagaag
ctctttctcctgtttctcacaggaagtgaccgcattcccatcctgggcatgaaaagcctg
aaactggtgatccaacccacgggaggcggggaacactacctgcccgttgcacacacctgc
ttcaacctattggacctgcccaaatacagcagccgggagacgctccaaaacaagcttctc
caagccatagatcacaatcaaggtttcaacctggcctaa
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