Oncorhynchus gorbuscha (pink salmon): 124041476
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Entry
124041476 CDS
T07892
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
124041476 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ogo03036
]
124041476 (ercc6)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124041476 (ercc6)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
124041476 (ercc6)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
124041476 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
124041476
NCBI-ProteinID:
XP_046215058
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All DBs
Position
LG08:complement(30149635..30198916)
Genome browser
AA seq
1484 aa
AA seq
DB search
MPVEDTENQVPLILSNPASAALTPGGMEEDGANRGTAGCSISITGTSQGDTEQPAMACPD
STGSGEGSSAIKKSGALLHIDRQLIQAVSASSGAAELQGLGVAVYDQDVLEQGVLQQVDQ
AIHEASQAAAKAEAEKEYQSVLDDVRSCMAALKHINKIIEQLTPYATSSKDINRKMESVR
RQKENKEKQLKKIRAKQRRLQAILGGEDTLKIEAELLLEDDVDEEPGPSTLGSMLMPEQE
TEWEELIRTGHMTPFGTRVPQKEEKKEPRKFMLSENSGFDAYLADQAKMAVDRKRPAPLK
QKKTAVGKEGKKTNEAALPSYSVDKNLQKRMRKLQRTALKAHSKAPAKRVTLIPKPRTKL
QAGGDEMDSEGSEYLPSDELMDPEREEREDRDEGWGEEDEVDYYELKPYRKKSGEKGGKK
GRRRERDEEYYPDSSEEDKGSGKKGKEKMKKDDGDVEFYKQRIRRWRRLRLREREEKRER
GEEESDQSDAEFDEGFKVPGFLWNKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQ
VIAFLAGLSYSKLRTRGSNYRYQGLGPTVIVCPATVMHQWVSEFHTWWPPFRVAVLHDTG
SFTQTKEKLISEMAACHGVLITSYSAVRIMQETLQRYDGWHYVILDEGHKIRNPHAGVTT
ACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPIFMEQFSVPITMGGYSNAS
PVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEAQREVYQGYL
DSKEVYQILNGDMQVFSGLIALRKMCNHPDLFSGGPKILKGIPEDQLTEEEHFGFWKRSG
KLMVVESLLRLWFKQQHRVLLFTQSRQMLGILEVFVRENGYTYVKMDGTTTIASRQPLIA
RYNEDKSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKEVTV
YRLLTAGTIEEKIYHRQIFKHFLTNRILKDPKQRRFFKSNDIYELFTLSNPDGTQGTETS
AIFAGTGSDVQAPKKPVRPRSNHRHSVTNHNVSSTGGGAIPSPSPRPGDRTTPLRSNISL
NKDSQEANQGEADIPIGQSQTECDTQHSREEGSNAHILTDPDRDQNSILTHKHRDSPVTS
PNPHKHSHTNSVSPSTQKQRDKHSPHKHRESQGPGPSPYKHREKRKHCDSTIEGPKNKHG
NQKQAKVEGHRISYLVKKRSYKGQEEREEQPEKQDQRQSDDYVLAKLFKKSGIHSVMQHD
SIMEASNPDFVLVEAEANRVAKDALKALKVSRQHCRLPYNQPAPAPARKRFGQKKNPLLS
APPATVVPAQDKCKDAAIIKKTIARKPIPGGHFSGEGVEVGGSSSTTAPLSSSTLLARMK
DRNHLSLPQREGDEGEEEEGGARIPSGPPAPPTEHDELLVELRNFVAFQGAVDGQASTKE
VLDHFTPRLTHTQTPVFRELLRNICNFHRAKGQEGTWRLKPDYR
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgccagtagaagatactgagaaccaggttcctcttatcctctccaacccggctagtgct
gctctcaccccgggaggaatggaggaggatggggccaacaggggaaccgctggatgctca
atctccatcacagggaccagccagggggacactgagcagcctgcaatggcctgcccagat
agcactggatctggggagggcagcagtgccattaagaagtctggagccctgctacacatt
gaccgtcagcttatccaggctgtgagtgccagctccggggctgcagagctacagggtctg
ggtgtcgccgtgtacgaccaggatgtgttggagcagggggtcttgcagcaggtggaccag
gccatacacgaagccagccaggctgcagccaaggccgaggcagagaaggagtaccagtct
gtactagacgatgtcaggtcatgtatggcagctctgaagcatattaataagatcatagag
cagctgactccctatgctacttccagtaaagacattaacaggaagatggagtctgtcaga
cggcagaaagagaacaaggagaagcaattgaagaagatcagagcaaagcagaggagacta
caggccatcctgggtggagaagacacactgaagatagaggctgagctactgctggaggac
gatgtggacgaagagcccggcccatctactctgggcagtatgctgatgccggaacaggag
actgagtgggaggagctaatccggacgggtcacatgacaccgtttggaacgagggtccct
cagaaggaggagaagaaggaaccacgcaagttcatgctgtctgaaaactctggcttcgac
gcttacctggcggaccaagctaagatggcagtggacaggaagagacctgcacccctaaag
cagaagaagactgctgtgggcaaggaagggaaaaagaccaacgaagcggctctcccctcc
tactctgtggataagaatctccagaagcgaatgcgtaagctgcagaggaccgctctgaag
gcccactctaaggccccggctaagagggtcacgctgatccccaagcccaggacgaagctt
caagctgggggagatgagatggacagcgaggggtctgagtacctccccagtgatgaactg
atggaccctgagagagaagagagggaggaccgagatgagggctggggagaggaggatgag
gttgactactatgagttaaagccctacaggaagaagagtggagaaaagggggggaagaag
gggagaaggagagagcgtgacgaggagtattaccccgacagctcagaggaagacaagggt
tcagggaaaaagggaaaagagaagatgaagaaagacgatggagatgtggaattctacaaa
cagaggatacggcggtggaggcggctgcggctgagagagagggaggagaagagagagaga
ggagaggaggagagtgaccagagtgatgctgagtttgatgaaggattcaaagtgcctgga
ttcctctggaataaactcttcaagtaccagcagacaggtgtaaggtggctgtgggagcta
cactgccagcaggcagggggaatcctgggggatgagatgggtctgggtaaaaccatccaa
gtcatcgcattcctggctggcctcagctacagcaaactacgcacacgagggtccaactac
agataccaaggactaggtcctacagtgatagtgtgtccagctacagtcatgcaccagtgg
gtcagtgagtttcacacctggtggcccccattcagagtggctgtcctacacgacacggga
tccttcacccaaacaaaggagaagttgatatcagagatggcagcatgtcatggtgtcttg
ataacgtcgtattcagccgtgaggatcatgcaggagaccctgcagagatacgacggctgg
cactacgttatactggacgagggacacaagatccgcaaccctcacgctggagttaccact
gcctgcaaacagttccgtactcctcataggttcattctatctggcagtcctatgcagaac
aatctgaaggagctgtggagtctatttgactttgtcttccctggaaaactgggcacgctg
cctatttttatggaacagttctctgtaccgatcaccatggggggctacagcaacgcttca
cctgtacaggtccagacagcgtataagtgtgcgtgtgttctgagggataccattaaccct
tacctgctcagacggatgaaggctgacgtgaaggccaacctctctttacctgacaagaat
gaacaggttttgttttgcaggctaacagaggcgcagcgtgaggtgtatcagggctatctg
gactccaaagaggtctaccaaatactgaatggagatatgcaggtgttctcgggcctgata
gcactgcgtaagatgtgtaaccacccggacctgttctcagggggtcccaagatcctgaag
ggtataccagaggaccaactgactgaagaggaacactttggcttctggaaacgttccggc
aaactgatggtggtggaatcactgctccgactttggtttaaacagcaacacagagtcctg
ctgttcacacagtccagacagatgttggggatattggaggtgtttgtgagggagaatggc
tacacctatgtgaaaatggatggtaccaccaccatcgcctccagacagcctctcatcgct
cgatacaacgaagacaagtctatctttgtgttcttgttgaccaccagagtgggggggctg
ggagtcaacctgaccggagccaaccgagtcatcatctatgaccccgactggaaccctagc
actgacacacaggctcgagagcgagcttggaggatcggtcagaaaaaggaggtgactgtc
tatagactactgaccgccgggaccattgaggagaagatctaccacaggcaaatcttcaaa
cacttcctgaccaaccgcattctgaaggaccccaaacagcgacgcttcttcaagtccaac
gacatctacgagctgtttaccctatctaatcctgacgggacgcagggcactgagaccagc
gctatatttgcaggcaccggttctgatgtccaagctcctaagaagccagtcagaccaagg
tctaaccatagacactctgtaaccaatcacaatgttagctccactggaggtggagccatc
ccttccccatcgccccggcctggagacaggaccaccccccttcgcagtaacatctctctc
aataaggacagccaggaagccaaccagggcgaggcagatattcctattggacagtcccag
acagaatgtgacacacagcattctagggaggagggaagcaatgctcatatactcacagac
ccagacagagaccaaaactccattctgacccacaaacacagagactcacccgtgaccagc
ccaaacccacacaaacattcacacacgaactccgtcagtcccagcacacagaaacaacga
gacaaacacagtccacacaaacacagagagtctcaaggacctggccccagtccctacaaa
caccgggagaagaggaagcactgtgactcgacaatagaaggacctaaaaacaaacacggg
aatcagaaacaggccaaggtcgagggtcatcgcatctcttacctggtgaagaagaggagc
tacaaaggacaagaggagcgcgaggagcagccggagaaacaggaccagagacagagcgac
gactacgtactggccaaactcttcaagaagtcgggtatccacagtgtaatgcagcatgac
tccatcatggaggcgtctaacccagactttgtcctggtggaagctgaagctaacagagta
gctaaagacgctttgaaagctctgaaggtctccagacaacactgtagactgccctacaac
caacctgccccagctccagccaggaagaggtttggtcagaagaagaatcctttgctgtct
gctcctcctgctacagttgtcccagctcaggacaaatgcaaggatgctgccatcatcaag
aaaaccatcgctaggaaacccatcccagggggtcacttcagtggagaaggggtagaggtg
ggaggctcttcctctactacggcccccctctcttcctccactctactggcccgcatgaaa
gataggaaccacctcagcctgccccagagagaaggggatgaaggagaagaggaagagggg
ggtgcccgtatcccctcaggccctcctgccccccctacggaacacgatgaactcctggtg
gagctgagaaactttgtggcattccagggagctgtggatggacaggccagcaccaaggag
gtcctggaccacttcacccccagactgacccacacccagacccctgtcttcagagaacta
ctccgaaacatctgtaacttccacagggcaaaggggcaggaggggacgtggagacttaaa
ccagactacagataa
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integrated database retrieval system
