Oncorhynchus gorbuscha (pink salmon): 124041749
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Entry
124041749 CDS
T07892
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124041749 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogo01009
]
124041749 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124041749 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
ogo03029
]
124041749 (rb1cc1)
Protein phosphatases and associated proteins [BR:
ogo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124041749 (rb1cc1)
Membrane trafficking [BR:
ogo04131
]
Autophagy
Autophagosome formation proteins
ULK complex
124041749 (rb1cc1)
Mitochondrial biogenesis [BR:
ogo03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
124041749 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
124041749
NCBI-ProteinID:
XP_046215665
LinkDB
All DBs
Position
LG08:47793586..47812765
Genome browser
AA seq
1634 aa
AA seq
DB search
MKLYVFQVNNGSTLAFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYINYQQ
EFEDIKLKLTKLGTAVSVMANIPLLECLTRHSYKECIEKSCSTPNKDSDETEEEKSTDSV
LCHSPTKLPASFSAPGAGDSPDTAETQESSEMTDSSGLRAALQEADSPERANPLSFNVTL
LDWINVQDRPNDVESVVRKCFDSINRLDPRVIQPFLAECRDTIAKLDNQNMKAIKGLEDR
LYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIMLTNHR
KLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMERVRVVDA
LSTVPQMYCLAVVEVVRRKLFIGHYREWACALVKDGKHLYETEKYKRETFGKLFRKCFLR
NRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRVPTLCDFEP
LHLHVEMLQQLVLASQAASVDEMSQTITNLLSEQRGSCSQSAQRSTAAVTPQSDSTPGTS
SPKTPSSLSLPGPPCQPLPGPTALEDLSPDSIDAQTFDFETIGHPNMDPVLQQAGSLDLD
SLAESPESDFLSAVNEFVIENSPTPISDPTSPEMMVESLYSSVINAIDSKRMHDTTTLER
ENSKVATLNLSIEKYRSAAEESQANLRSVKDDLYRFRGLVLKEQRDFGFALKTMTIEVHN
MVDTIRKREEEELREQHQAELLSVQQDHEKQLQTLTEENRVNQNIVKDVQRAMLELEGLL
EHKEKELTQLEAERQCWTEAESGHTQSLSVLEHKISDQAHEVLTVAASRDSLYNQLETLH
IEIERGQQKIRQELEGAEQVHLQELEERMRQQHQAQLDTLARENQEAMECLATVHRVKLS
EVADSHATSLTERDGQLRDLEARATELADLRCKLEVELALKESEMEVVRLLYEEAKQGQQ
EANVRKATVEAETQSLNEQLVQVNGQLHAKNEEYEKGLAELRMLMCMEKDQCISELVGRH
EEERNQRRSELTALQQQAQDAGRSHAEQLQNLQLDLDLQTAALRNDKEVQQSRFEEQEQH
LRTVICDLQTENDLLTKRLEQDTEAAQERLEKEESLKAAVPDAFKDFEQQKEEIEKRLLD
KIRQLENELRERQSSEREAGLSKVQTEGRGSEAGAPLSLDSALQERLQQETASLHTQLEL
LERRKDEEMQNLKTSLIAEQQTNFNTVLMREKLKKEQIISELTEELRKVTQQQEKDKGLI
EMLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNLLALEPTGAGARLGSGACPGPG
TEVGAGACSSELFPDPDRLASVAATREDDRVDSAVEASMVTVHDNILMMSEEKQRILLLE
RTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTV
GPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGT
KFYRVKAVPWNKKV
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggaagcactctggcatttgacacagagctc
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaaatacaagattgcaacc
cagcatcaagttctggttgtcaatggaggggagtgtatggttgcagagaggagagtctgc
agctacagtgccggcactgacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgacaatccctaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtttgaagtcgccaagaaactttgctctttctgcgaacgcctggtt
catgatgaacatctccaacaccaaggttgggctgctatcatggcaaacctcgatgactgc
accctgtcttatcagaagctactgtggaaatttgacacggcgtacattaattatcaacaa
gaatttgaggatatcaaattgaaactgacaaaactggggacagcagtttcagtcatggcc
aatatccccctgctggagtgtctgacccgccacagctacaaagaatgcatagagaagtcc
tgctccactccaaacaaggactctgacgagaccgaggaggagaagtccaccgactcggtg
ctctgccactcccccaccaagctacctgcatcgttctctgctccgggggcgggggactcg
cccgacaccgccgaaacccaggaaagcagtgagatgacggacagtagtgggctgagggca
gccctgcaagaggcagactctccagagagggccaaccccctgtccttcaacgtcacactg
ctggactggattaatgttcaagacaggcccaatgatgtggaatcagtcgtgaggaaatgc
tttgactccatcaataggctcgacccacgggtcattcaaccattcttagcggaatgtcga
gacacgattgccaaactggataatcagaacatgaaagccatcaaaggacttgaggacagg
ttatacgctctagaccaaatgatagcgagctgtaaaaagttggtcaatgaacagaaggaa
cttgctcagggctttctggccaatcagaagcgtgctgagaacctgaaggatacgtccgtg
ctgcctgacctgtgtctcagtcatgccaatcagctgatgatcatgctgaccaaccacagg
aagctgctggacatcaaacagaagtgcaccactgccaaacaggagctggcgaacaaccta
caagttcgtctcaaatggtgctgctacgtgatgctgcacgcggaccaggatggggagaag
ctgcaggccctgctgaggctgttgaccgagctgatggagagagtccgggtggtggacgcc
ctcagcaccgtgcctcagatgtactgcctggccgtggtggaggtggttcgcaggaagctc
ttcatcggccactacagagagtgggcctgtgctctcgtgaaggatggaaagcatctctat
gagaccgagaagtataaaagggaaacgtttggcaagttgttcaggaaatgttttctccga
aatcgtttgtttagaggacttgactcatggccccccacttcattttgcacaagaaagccc
agaaagtttgactttgagcttcccgatatttcccttggtgacctgcagtacttaaagacc
tgttgtcctacagaggtgcagcctttcctcagggttccaacactgtgtgattttgagcct
ttgcatctgcatgtggagatgcttcaacagttggtccttgcttctcaagctgcaagtgtg
gatgagatgtctcaaactatcaccaatttactcagcgaacaaagggggtcgtgcagccag
agtgctcagagatccacggcagcggtgaccccacagtccgacagcaccccagggacttcc
tcccccaagaccccctcctctctcagtctcccggggcccccctgccagcccctccctggc
cccaccgccctggaggacctgtccccggacagcatcgatgcccaaacctttgacttcgag
acaattggccaccccaacatggaccccgtcctgcagcaggccggctccctggacctggac
tccctggctgagagcccggagtcagacttcttgtcggcggtcaacgagtttgtgatcgaa
aactcgcccacccccatcagtgaccccaccagcccagagatgatggtggagtcgctgtac
tcgtcggtcatcaacgccatcgacagcaagcgcatgcatgacaccaccacattagagagg
gaaaactccaaggtggctacgctgaatctgagcatcgagaagtaccgctctgctgccgag
gagtcccaggccaacttgcggagcgtcaaggatgacctgtaccgcttcagaggcctggtg
ctgaaggagcagcgagactttggcttcgccctgaagaccatgaccattgaggtgcacaac
atggtggacaccatccgtaagagggaggaggaggagctgagagagcagcaccaggccgag
ctcctctctgtgcagcaggaccacgagaagcaacttcagaccctgacggaggagaaccgg
gtcaaccagaacatcgtgaaagacgtacagcgggccatgctggagctggaggggctgctg
gagcataaggagaaggagctgacccagctcgaggctgagaggcagtgctggaccgaggcg
gagagcggacacactcagagcctcagtgtcctggagcacaaaatcagcgatcaggcccat
gaggtgctgactgtggctgcttccagagactccctgtacaaccagttggagacactccac
attgagatcgagcgcggccagcagaagatccgccaggagctggagggggccgagcaggtc
cacctgcaggaactggaggagaggatgaggcagcagcatcaggcccagctagacaccctg
gcccgggagaaccaggaggccatggagtgcctggcaacggtgcacagggtcaagctgagt
gaggtcgcagacagccacgccacctctctgacagagagggacggccagctgagggacctg
gaggcccgggcaaccgagctggctgacctacgctgcaagctggaggtggagctggccctg
aaggagtcagagatggaggttgtgaggcttctctacgaggaggccaagcaggggcagcag
gaagcaaacgtgaggaaggctactgtagaggcagagacccagtccctcaacgaacagcta
gttcaggtcaacgggcagctgcatgctaagaacgaagagtacgagaagggcctggccgag
ctccggatgctgatgtgcatggagaaagaccagtgcatctcggagctggtgggcaggcac
gaggaagagcggaaccagcgccgcagcgagctgaccgccttgcagcagcaggcccaggac
gcaggaaggagccatgcagaacagctgcagaacctccaactagacctcgacctgcagacg
gcagcactgcgcaacgataaggaagtgcagcagagtaggtttgaggagcaggagcaacac
ttgaggactgttatctgcgatttgcagacagaaaatgatctgctcaccaaaagattagag
caggacaccgaagcagcccaggaacgtttggagaaagaggagtccttgaaggctgcagta
ccagatgccttcaaagactttgagcaacaaaaggaggagattgagaaaagacttctagac
aaaattagacaacttgaaaatgagcttcgggaaagacaatcctcagaaagagaggcgggg
ttgtcgaaggtgcagacagagggtcggggatccgaagcaggagctcctctctccctggac
tctgccttgcaggagcgtctgcagcaggagacggcctccctgcacacacagttggagctc
ctggagaggaggaaggatgaggagatgcagaacctcaagacctccctcatcgcagaacaa
cagactaacttcaacactgttctgatgagagagaagctgaaaaaggaacagatcatcagt
gagctcacagaggagctgcggaaggttacccagcagcaggagaaggacaaaggtctgata
gagatgctgtctgaggaccgggccatcgtcatgcaggagaagaagcagttggaggaggat
ctgaatcggctgcgcagcacagccctggtgtcctctgcctactacagccctaacctctta
gctctagagcccactggagctggggctagacttggatctggagcatgtcctggacctggg
actgaggttggggctggagcctgctcctcggagctcttccctgacccagacagactggcc
tctgtggctgccaccagagaggacgacagagtggactctgctgtggaggccagcatggtg
actgtgcacgataacatcctgatgatgtcggaggagaaacagcggatactgttacttgag
aggactttacacatgaaggaagaagaaaacaagcgcctcagtcaaagactgatgtctcaa
agcatgtcctcggtgtcgtcacggcattctgagaaaattgccatccgagatttccaggtt
ggcgacttggttctgatcatcctcgatgaaaggcatgacaactatgtgctattcaccgtg
ggtcccaccctgtacttcctccattctgagtccctcacggccctggacctcaaaccagat
cctatgtttacttcagcatcaggagcctcaagacggccgtgggttctcggaaaagttatg
gagaaagaatattgccaggcgaaaaaggctcaaaaccggttcaaagttcctttgggcacc
aagttctacagggtgaaagctgttccgtggaacaagaaagtatag
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integrated database retrieval system
