KEGG   Oncorhynchus gorbuscha (pink salmon): 124041870
Entry
124041870         CDS       T07892                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04115  p53 signaling pathway
ogo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124041870
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    124041870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ogo04121]
    124041870
Enzymes [BR:ogo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124041870
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124041870
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     124041870
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML zf-RING_UBOX Beta-prop_DCAF4 zf-C3HC4_3 Beta-prop_WDR90_POC16_2nd zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-RING_10 WDR90_beta-prop_4th UvrD-helicase zf-rbx1 zf_C2H2_10 Sina_RING
Other DBs
NCBI-GeneID: 124041870
NCBI-ProteinID: XP_046215912
LinkDB
Position
LG08:complement(56654185..56664137)
AA seq 712 aa
MSSNRQQQTGGGTGPGTSSSSTGGTTNANGATSVGGNVSTNVNNSSNVVPSRTLATTGDG
LLVPAAAVQSPISLATLSRPSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPICFE
MIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSD
EKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILM
EFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPMSDMDRNLDSTVPNFEAPSP
APSSLMDSTEYPSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMTRL
TDDSRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIA
GVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD
GFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVC
CVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTD
SQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFK
FDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGESNVLIAANSQGTIKVLELV
NT seq 2139 nt   +upstreamnt  +downstreamnt
atgtcaagcaaccgtcaacagcaaactggcggtggaacggggcctggaacaagtagcagc
agtaccggtggcactaccaatgctaacggtgctaccagcgtaggcggtaacgtcagtacg
aatgtgaataattcttcaaatgttgtgccctcacggactctggctacaactggcgatggg
ttgctcgtacctgcagcggctgtccagtctccaataagcttagccacacttagcagaccc
agttcatcctcttctggcaccagcagaaaacgtcctctccaccaagcacctctctacaat
ggtctcttgaattcatacgaagataaaagcaacgattttgtgtgcccgatctgttttgaa
atgattgaggaagcacacatgacaaaatgtggacacagtttctgctacaagtgcattcgc
cagagtttggaggacagcaataggtgcccaaaatgtaactacatcattgacaacgtggat
cagctctatccaaactttcttgtcaatgaactcattctcaaacaaaaacagagatcagat
gaaaaacggctgaagatggaccatccgaatgggtcaagatggcaagtctttcaagacgtc
ctgggcacagaccaagagaacctagatcttgctaatgtcaacttaatgctggaactcctt
gtacagaaaaagaaacagctggaagcggaatcacaagctgctcaacgtcagatcttaatg
gaattcctcaaagaagcaagaagaaataaaagagagcaactggagcagttgcagaaggag
ctaaactttttggaggaggatatcaagcgtgttgaggaaatgagtggactgtactcacca
atgagtgacatggatcgtaacttggacagcactgtgcccaatttcgaggctccctcacct
gcacctagtagtcttatggattcgacagagtatccgagtcaaccaccaggttttggtgga
acttcccagggtaagaggcaaacatggtacaacagtactctggcttcacgtagaaagaga
ctcacagcgcactttgaagatttggagcaatgctacttctctaaccgaatgacccgatta
acagatgacagcaggaacctaaatcaactggatgatttcatggagtgtctctcaaagttc
acacggtacaactctgtgcggccgttggcgaccctgtcttatgctagtgatctctacaac
ggctccagtattgtctctagcattgaatttgaccgtgactgtgattactttgccatcgct
ggcgtcaccaagaaaatcaaggtgtttgagtatggaacagtgatccaggatgctgtggac
attcattaccctgtcaatgaaatgacgtgcaactccaaaatcagctgtatcagctggagc
agctaccacaagaatctgttggctagcagcgactacgagggaacagtcatcctgtgggat
ggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaagatgttggagtgtc
gatttcaacctcatggatcccaagcttctagcctctggttctgatgatgcgaaagtgaag
ttatggtctaccaaccttgataattcagtcgccagcatcgaggccaaagcaaatgtgtgc
tgtgtaaagttcagtcccacgtcgaggtatcaccttgcttttggatgtgcggaccactgt
gtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaaggccacagg
aaagctgtgtcctacgctaagtttgtcaacggagaggaaattgtatctgcctcaacagac
agccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattcaagggccac
atcaatgagaagaactttgttggccttgcctccaatggggactatgttgcgtgtggaagt
gagaacaactcactttatctctactacaaggggctgtccaagacactgctgacattcaag
tttgacactgtgaagagtgtgttggataaagacaagaaagaggatgacaccaacgagttt
gtcagtgccgtatgctggagagctatgcctgacggggagtccaatgtgctgattgctgca
aacagtcaaggaacaatcaaggtacttgagcttgtttaa

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