Oncorhynchus gorbuscha (pink salmon): 124042004
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Entry
124042004 CDS
T07892
Name
(RefSeq) ubiquitin-60S ribosomal protein L40-like
KO
K02927
ubiquitin-large subunit ribosomal protein L40e
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03010
Ribosome
ogo04120
Ubiquitin mediated proteolysis
ogo04137
Mitophagy - animal
ogo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
124042004
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124042004
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124042004
04137 Mitophagy - animal
124042004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
ogo03011
]
124042004
04121 Ubiquitin system [BR:
ogo04121
]
124042004
Ribosome [BR:
ogo03011
]
Ribosomal proteins
Eukaryotes
Large subunit
124042004
Archaea
124042004
Ubiquitin system [BR:
ogo04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
124042004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_L40e
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
DUF2604
TBK1_ULD
Ubiquitin_5
zf-C4pol
OTU1_UBXL
Dsc3_N
UBL_UBAC1
Motif
Other DBs
NCBI-GeneID:
124042004
NCBI-ProteinID:
XP_046216214
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Position
LG08:64913503..64928054
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AA seq
128 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTSN
LRPKKKLK
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgcagatctttgtgaaaacgttgacgggtaaaaccatcacccttgaggtggaacccagt
gacaccatcgagaatgtgaaggccaagattcaagacaaagaaggtattcctcctgaccaa
cagcgactcatcttcgctggcaaacagttggaggatggccgcacattgtcagactacaac
attcagaaagagtccactctacatctcgtgctgcgtctgagaggaggtatcatcgagcct
tccctgagacagctggcacagaaatacaactgtgacaaaatgatctgccgcaaatgctat
gcacgtcttcacccccgtgcagtcaactgccgcaaaaagaagtgtgggcataccagcaac
ctgcgccccaagaagaagctgaagtaa
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