Oncorhynchus gorbuscha (pink salmon): 124042005
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Entry
124042005 CDS
T07892
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124042005
03015 mRNA surveillance pathway
124042005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124042005
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124042005
5.6.2.5 RNA 5'-3' helicase
124042005
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124042005
mRNA cycle factors
Common to processing body (P body) and stress granule
124042005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
TraI_hel_assoc_N
Motif
Other DBs
NCBI-GeneID:
124042005
NCBI-ProteinID:
XP_046216216
LinkDB
All DBs
Position
LG08:complement(64966681..64977813)
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLENQVNGP
DGVQQNGDDPVVKASQLLAELNFEEDEEDSYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLSAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTLGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSSTGRSSNMYFQTHDQIGMIGPGPMASMNIPF
NLVMPPMPPPGYLGQVHCPPAGRGGGMKGRAGGGGVRGGRQRSRGMGNHGGGSGQHGLMS
GSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacactgaggaa
gcggagttgcttggagcagatacccagggctcggagtatgagttcacggattttaccctg
ccgagccagactcaaacaggccaaacgcagagtcagttggaaaatcaggtgaatgggcct
gatggagtacagcagaatggggatgaccctgttgtgaaagcaagtcaacttcttgcagag
ttgaactttgaagaagacgaggaagacagctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcacgatcctgcttgtgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacatctggcagccacattgtgaaccacctggtcaga
gccaagtccaaggaggtgactctgcacaaggatggtcctttgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctggggttcatccctgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcctggctg
gttaagatcccctctgagcaggagcagctgcgggcccgccagatcactgcccagcagata
aacaagcttgaggagctctggaaggaaaaccccacagccactctggaggacctggagaag
cccggcgtggacgaggagcctcagcacgtgttgctgcgctacgaggatgcctaccagtac
cagaacatctttggccccctggtcaaactggaggctgactacgataagaaactcaaagag
tcccagacccaagacaatattactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggagatgag
atttgcctgaggtacaagggagaccttgccccactctggaaaggcattggacatgtcatc
aaagtcccagacaactatggcgatgagatagccatcgagctgaggagcagtgctggggcc
cccgtggaagtaccacacaacttccaggttgattttgtgtggaaatccacctcctttgac
cggatgcaaagtgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtatatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccaggggccccctggcacggggaaaactgtcacc
tctgccactgtagtgtaccacctggccagacagggcaacgggcctgtgctggtgtgtgct
cccagtaacattgcggtggaccagctgactgagaagatccacatgtcaggtctgaaggtg
gtgaggctgtctgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctccagcagctgaag
gacgagactggggagctgtcctcctcagacgagaagcgctacagagccctgaaacgcacc
gcagagagggaactacttatgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgacgagagcacccaggcc
actgagccagagtgtatggtgcctgtcatactgggggccaagcagctgatcctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggctgccaaggcgggcctgtcc
cagtccctgtttgagcgtctcgtggtgctgggcatcaggcctatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgctttcccctccaacatcttctacgagggctccctg
cagaacggagtcactgcagctgaccgcatcaagaaaggctttgacttccagtggccacaa
ccagacaagcccatgttcttctacgtgaccctgggccaggaagaaattgcaagctctgga
acctcctatcttaacagaactgaggcttccaacgtggagaagatcaccaccaggctgctt
aaggccggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagttcagtggctccctccacaccaagctctaccaggaggtg
gagatagccagcgttgatgcgttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcattggcttcctcaacgacccacgccgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctcaactactataaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagccccgcaaactggtcaac
gccatcaaccctgggggccgtttcatgagcacagccatgtatgatgcaagggaggctctt
attcctggatctgtgtatgaccgtagcagcactggacgttcatccaacatgtacttccag
acccacgaccagatcggcatgattggtccgggccccatggcctccatgaacattcccttc
aacctggtcatgccccccatgccaccgccaggctacctgggccaggtccactgcccgcca
gcaggccgtggtggaggtatgaagggtagggcgggcggcggaggggtgcgaggtgggcgc
cagcggagccgtggcatggggaaccacggcgggggcagcgggcagcacggcctcatgagt
ggcagccaggccagccaggacctgggttcccagcccttctcccagggacccctcacacaa
ggctacatcaccatgagccagccttcccagatgagccagcctggcctctcccagcctgaa
ctctctcaggacagctaccttggcgatgagttcaagtcccagattgacgtggccctctcc
caagactccacctaccaaggggaaagagcttatcaacatggtgtgactggactgtcccag
tactag
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