Oncorhynchus gorbuscha (pink salmon): 124042106
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Entry
124042106 CDS
T07892
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124042106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124042106
Spliceosome [BR:
ogo03041
]
Complex A
U1 snRNP components
U1 related factors
124042106
Complex B
124042106
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
124042106
NCBI-ProteinID:
XP_046216401
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All DBs
Position
LG01:complement(75662663..75703020)
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AA seq
891 aa
AA seq
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MSSDGNNGQSQAPPFAGVPTSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGQIPGMMPPMMPGMMMPPHMSAAAMQPTGPPGVDTTVTAAPGTVGTTNGTPQ
DDQPKKKSVWTEHKSMDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYKSDNGK
AYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAPCAVIAPTLQPDSAAVMATMMM
EMPVMMPITTVLEEQMSQVPMHVAEVSAEAPVNSTEEAVGMEASASNDASKDERPELVKK
TYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKV
QTEKEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPERDRLE
IYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQ
LHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKNFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEATFKSMLKQATPALEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSRSRSGSESDGEDDYHNKKKKRSQSKSPSE
RSSSGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKDKGRERDSKREKDQEKEKESDK
SRGKSRSDSKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggggtcccaacc
tcaggcatgccgccgccttttatgggaccaccgggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccacctggcatgatg
ccacctggcatgatgccaccgatgggacagataccaggcatgatgccacctatgatgccc
gggatgatgatgccccctcacatgtctgctgcggcgatgcagccaacaggaccgcctgga
gtggacacaactgttactgctgcgcctgggacagttggtaccacaaatggcacgccacag
gatgaccaaccgaagaagaagtctgtgtggacagaacacaagtccatggatgggaagacc
tactactacaacaccgagaccaagcagtcttcctgggagaagcctgatgacttgaaatct
cctgcagaacaaatgctgtcaaaatgcccatggaaggagtataaatcagacaatggcaag
gcgtactactacaactcccagactaaggagtcccggtggaccaaacccaaagagcttgaa
gatctagaagccatgataaaagccgaggagaatgggacatcggaggtaggcgctccttgc
gctgtaatcgcccccacccttcagcctgacagtgctgctgtcatggcgaccatgatgatg
gaaatgccggtcatgatgccgattacaacagttttggaggaacagatgtcccaggtgccc
atgcatgtagcggaggtcagcgctgaggcgcctgtgaactccacagaagaagcggtcggc
atggaggcctcagccagtaatgacgcttcgaaggatgagaggccagagctggtgaagaaa
acatacaagtggaacacgaaagaagaggccaagcaggcctttaaggagctcctgaaggag
aagggcgtttcatccaatgcgtcttgggaacaagccatgaaaatgatcatcaatgaccca
cgctacagtgccctgcccaaattaagcgagaaaaagcaggccttcaatgcttacaaggtg
caaacagagaaagaggagaaggaggaggccagactcaaatacaaggagtccaaggaaacg
tatcagagatttttggagaatcacgagaaaatgacatctaccaccagatacaagaaagca
gagcagatgtttgcagagctggacgtgtggagcaccgtcccagagagagaccgactggag
atctatgaagatgtcctattctacctggccaagaaggagaaggagcaagccaagcagctg
aggaagaggaactgggaggcgctgaagaacatcctggacaacatggccaacgtgacctac
cgcaccacctggtccgaggcccagcagtacctgctggacaaccccaccttcgcagaggac
gaggagctccagaacatggacaaggaggatgctctgatctgttttgaggagcacatccgc
gcgctggagaaggaggaggaggacgagaagcagaagactttgctgagggagaggaggaga
cagcgcaagaacagagagtccttccagaaattcctggacgagctccatgaccacggtcaa
ctccactccatgtctgcctggatggagatgtaccccaccgtcagctcagacatccgcttc
gccaacatgctgggccagccagtttatggtgtctattctgcaggctccactcccctcgat
ctgttcaagttctatgtggaagacctgaaggctcgctaccatgacgagaagaggatcatt
aaggatatcctgaaggacaaaaacttcctggtggaggtcaacactagctttgaagacttt
ggctctgtgatcagctcagacaagagagccatgactctggacgcaggcaacatcaagctg
gccttcaacagtttgctggagaaggcagaggctcgggagagggagcgggagaaggaggag
gccaggaagatgaagaggaaagaggctacctttaagagcatgttgaagcaggccaccccg
gccctggaaccagaggccacctgggagggggtccgagaaaggttcctcaaagaatctgcg
ttcgaagacgtgactctggagtctgagaggaaaaggatattcaaagacttcatgcatgtc
ttggagcacgagtgccagcatcatcactccaagaccaagaaacattccaagaagtccaag
aagcaccaccggaagcgctcccgctcccggtctcgatcgcgatcgggctcggagtctgat
ggtgaagacgattatcacaacaagaagaagaagcgctcacagtccaagtccccgtccgag
cgttcctccagcggtgaatctgagagaagttataagaagtccaagaagcacaagaagaag
ggaaagaagaggcgtcacaagtcgcagtctcctgaatctgaaggcgaacgaaaagataaa
ggaagagagagggacagcaagcgtgagaaggaccaggagaaggagaaagagagcgacaag
tcccgggggaagagtcgctctgactccaagcagaagtctcctaaaaggaaatctaccaag
gaggagggtggctgggacacatcaggcagcgagctgagtgaaggagagctggagaagagg
aggaggactctactagaacagctggatgctccttaa
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