Oncorhynchus gorbuscha (pink salmon): 124042126
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Entry
124042126 CDS
T07892
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04382
Cornified envelope formation
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04518
Integrin signaling
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124042126
04518 Integrin signaling
124042126
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124042126
09142 Cell motility
04820 Cytoskeleton in muscle cells
124042126
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124042126
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124042126
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124042126
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124042126
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124042126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124042126
NCBI-ProteinID:
XP_046216439
LinkDB
All DBs
Position
LG08:69865093..69947817
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AA seq
1671 aa
AA seq
DB search
MSPFACWVTFCSLPIWWILLLHISEQRVNAGEKLGSCDGRDCSVCSCLPAKGARGGPGKL
GKQGPQGPDGIRGSAGPHGEKGRRGDEGPPGLDGKKGERGPTGHPGFPGIDGVNGHVGAG
GNPGLPGLDGCNGTRGLTGIPGVHGTNGFPGPRGYLGPKGTKGEPVYDVSGPGLPGDPGP
PGRSGSPGHAGPKGHTGPAGPNGNDGPYGPPGARGEPGDTGRSLPGIKGDEGDQGQPGPP
GPEEIVEPPDLFYPKGDKGDKGVPGPCGPRGITGEQSYEGLKGETGIRGFPGPRGYIGST
GLPGTPGPQGYSGDQGFPGLIGRSGPTGFPGDKGIRGPASQIYHNSTVAGYPGDPGPQGP
RGAPGDIGEMGINGPPGPPGVLSSTGQPGQLGYPGLPGPKGLKGEPGRYYTIEPIPGQPG
ERGRPGAKGFRGPPGRPGCGGIYCVPGEPGVRGDDGDTGYPGLTGYKGEKGYNGECECTY
ENGHRGIPGPPGPRGPLGYDGLPGHSGEKGDHGYNGDPGSQGSHGNPGRPGSNGVKGQKG
ESYVTNHKGAKGDPGFNGPNGPHGATGRPGSDGSLGAVGDPGPPGDGYGGSVGDKGYPGL
HGPKGPPGRPGPPGPGAPGRHGHQGPPGDAGLPGPPGQTGQPGPLGEVLPCGPSNPGLPG
LKGLLGPPGNPGPPGPLGFPGPTGSLGPQGMRGDDGTDGGTGPPGHQGCVGDNGDPGQPG
INLDGPPGLRGPPGSPGWPGPPGDTFNTGPGPVGPPGLPGLLGPKGDPGLPGIPGPPGGS
GPYGGVGYKGSKGDTGDPGLSGPPGPTECGEKGAVGPPGASGPPGVRGPSGFRGDKGHKG
VMGPPGRGVKGPAGIPGPPGPPGPVGAKGFSGSPGVPGFPGVTGTKGPRGYPGTDGSAVP
GTPGRPGNPGSHGRQGERGFTGRDGQDGDQGYKGAKGHRGPPGSPGPVGVITVKGQKGSE
GPPGEDGFTGARGSKGSSGSPGKPGGDGQDGPPGYEKGLPGQPGKPGPPGPPGPRGPKGL
SGVVGFPGPVGYKGDPGHTGPPGNPGLPGMTGLKGDPGDSIGQPGLPGPPGPPGECGTLD
AKGDPGDPGSPGPRGSPGQPGVHGARGPLGSPGFPGPSGPPGRPGSPGPPGGILGGQGPN
GNPGLPGPPGLPGPSGLHGLNGLQGQKGEKGARGPDVLGPRGPSGYPGVKGHTGSQGPPG
TSYPGSKGLRGPPGYQGPKGVTGEPGGSGGECSECHRGPNGEPGYEGIHGPPGPPGEPGP
AGTAEPFPGDPGPQGPPGPNGHKGQRGPPGPLGPTDYSGSQGPKGARGPVGHMGPNGARG
RPGAYGLLGPKGDKGKPGDAGPKGLPGQVLDGVVTTQEPYRGIHGPSGPSGPNGPPGKAG
PSGNPGPHGPKGPAGSRGPPGRNGPPGPPGPLGDPGDHGQQGFVGHQGPPGSQGDRGYPG
STGSVSSGFLLVIHSQSVEVPVCPEGSSPLWTGYSLFYLEGQERTHTQDLGQAGSCLRIF
STMPFSYCNTGTCDYASRNDKSYWLSTTAAVPMMPVSGHDIRAHISRCAVCETPSPAVAV
HSQDYIAPTCPPGWRSLWAGYSFLMHSGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPR
GTCHYFANVYSFWLTHVSLDEQFGPGPVPSVLKAADQQRQQASRCHVCTKG
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccttcgcttgctgggtgaccttctgttctctgcctatctggtggatcctcctg
ctgcacatctctgaacagagggtcaatgctggagagaagctgggctcgtgtgatggcaga
gactgctcagtgtgcagctgtctccccgccaagggagcccggggtggcccagggaagctg
gggaagcagggaccacagggcccagatggcatcaggggctccgcagggcctcacggagag
aagggaaggaggggtgatgagggaccacctgggctggatgggaaaaaaggggaaaggggt
ccgactggtcacccaggatttcctggtatcgatggtgtcaacggtcacgttggtgctggg
gggaatcctggcctgccggggctagacggctgtaacgggaccaggggactgacggggata
cccggtgttcatggcacgaacggattccctggacccaggggatatctcggtcccaaagga
acaaaaggggagcctgtctacgatgtatctggacctggccttcctggcgaccctgggcct
cctggaagatctggatcacctggccatgcgggacccaagggtcacacaggccctgctgga
cctaatggaaatgatggtccctacggtccacccggggctagaggagaaccaggtgacact
ggcagatctctgccgggcattaaaggtgatgagggggaccagggtcaaccagggcctcca
gggcctgaggagatcgtcgagcctccagaccttttctaccccaaaggagacaagggggat
aaaggggttcctggaccatgtgggcccagaggcataactggagaacaatcctatgaagga
ctaaagggagaaactggaatccgtggctttcctggccctcggggttacattggatctacc
ggcctgcctggaacgcctggaccacagggctattctggagaccaagggtttcctggtctg
atcggcaggtcaggaccaacgggcttcccaggagacaaaggcatcagaggaccagcgagc
caaatataccacaattccactgtagcaggttaccctggtgatcccggcccccagggtcca
aggggagcgccaggagacattggagagatgggcattaatggacctcctggaccaccaggg
gtattaagctccacaggtcaaccagggcagctaggttaccccggtctccctggtcctaag
ggtttaaagggggagccaggaaggtactacactatagagccaataccaggacaaccaggt
gaaagagggcgtcccggagccaaggggttcagaggccccccgggccgtccaggatgtgga
ggcatttattgtgttcctggtgagccgggtgtacgaggagacgatggcgataccggatat
ccaggattaacaggatacaaaggagaaaaaggctacaacggtgagtgtgagtgtacatac
gagaatggtcacagagggataccaggtcctccgggcccccgcggacccctagggtatgac
gggctgccagggcacagcggagagaaaggtgaccatggatataatggggaccctggctca
caaggatcccacggcaacccaggcaggcctggttccaatggagtgaagggacagaaggga
gagtcctatgtgaccaaccataaaggtgcgaagggtgacccgggcttcaatggccccaac
ggaccgcatggcgccaccggtcgaccaggatccgatggctcccttggcgctgtgggagac
cctggacccccgggtgacggttacggtggctcggtaggtgacaaaggctacccagggctc
catggacctaaaggccccccaggcagaccgggccccccaggccctggtgctccaggccgt
catggccaccaagggcccccaggggatgcgggcctcccaggtccccctggacaaactgga
caacctggacctctaggcgaggttctgccctgtggcccttccaaccctggcctacctgga
ttaaagggtctacttgggcccccagggaatcctgggccaccaggaccacttggtttccca
ggtcccacaggttcccttggacctcaaggcatgagaggagatgacgggacagatggagga
actggaccaccaggacaccaaggatgtgttggagataatggtgaccctggtcaacctgga
atcaacttggacggaccaccaggactccgtggaccaccaggctctccaggctggccggga
cctccaggagacaccttcaacaccggacctggtcccgtgggtccacctggactacctggg
ttactgggacccaagggagatcctggtttgccaggcatccctgggcctccagggggatca
ggcccgtacggaggtgtgggttacaaggggtcaaaaggagacactggggacccaggactg
agcggccctccagggccaacagaatgtggagagaaaggagctgttggcccaccgggagcc
tcaggaccaccaggagtcaggggcccatcgggtttccgtggtgataaaggacataagggt
gtgatgggtcctcctggacgtggagtgaagggaccagcagggatccccgggcctcctggt
cccccgggacccgttggtgccaaaggtttcagtgggtcaccaggtgtcccgggcttccct
ggtgtaacagggaccaaagggcccaggggatatcctggtacagatgggtcggctgttcct
ggtacaccgggtcggcctggaaacccaggatcccacgggaggcaaggggagaggggtttt
acaggacgcgacggtcaggatggagaccaggggtacaaaggagccaaaggtcacagaggt
ccccccggaagtcctggcccagtaggagtcataaccgttaaaggacagaagggctctgaa
ggaccaccaggagaggatggcttcactggagccagaggttccaagggctcaagtgggtca
ccaggtaaaccagggggggatggacaggatggtcctcctggatatgagaaagggctccca
ggacaacctggcaaacctggtccccctggacctcccggaccccgaggacctaaaggcttg
agtggtgtagttggtttccctggaccagtcggttataagggggaccctgggcacacgggc
cctcctgggaacccaggccttccaggaatgacaggcttaaagggtgacccaggagactct
ataggacaaccagggcttcctggaccaccgggtcctccaggagaatgcggaaccttagat
gcaaagggagacccaggagatccagggagcccaggacccagaggatcaccaggacagcct
ggtgtccacggagcccgaggaccactgggtagcccaggtttccctggtccctcaggtccg
ccaggtcgtccaggctccccagggcctcccggaggaattctcggaggtcaaggccccaat
ggcaatcctggactgcccggtcctccaggtctcccgggaccctcagggctgcatggtctg
aacgggctccaaggccaaaaaggagagaaaggagccagaggaccagatgtgttgggccca
cgagggccatctgggtaccccggagtcaaaggccacacaggctcccagggacccccggga
acttcttaccccggatctaaaggcctaaggggccctccaggctaccaaggaccaaaagga
gtcactggtgagcccggtggttcaggtggagagtgctcagaatgtcacagaggacccaac
ggagagccaggatacgaaggcattcatggacctccaggaccacccggtgaaccgggtcct
gctggtactgcagagccatttccaggagacccaggcccccaagggccaccagggcccaat
ggccataaaggacagagaggccccccaggacccctggggccaacagactactcaggatca
caaggacccaaaggtgccagaggccctgtgggtcacatgggccccaacggagcaagaggt
cgtccaggcgcctacggactcctggggcccaaaggtgacaaaggcaaacctggagatgca
ggtcccaaaggcctgcccggtcaggttttagacggtgtcgttaccactcaggaaccctat
cgtgggatccatggcccctcaggtccatctggtccaaatggtcccccgggaaaggctggg
cccagtgggaaccctgggcctcacggtcctaagggcccagctgggtcacgagggccccca
gggagaaatggacctccaggtccacctggacctttaggagatccaggcgatcatggacag
caaggttttgtgggacatcagggtcctccgggttctcagggtgaccgtggctaccccggt
tccactggctctgtgagttcaggcttcctgctggtgatccacagccagtcggtggaggtc
cctgtgtgtcccgagggcagcagccccctgtggaccggctatagcctgttctacctggag
gggcaggagaggacacacacacaggacctgggccaggccggctcatgtctgcgtatcttc
agcaccatgcccttctcctactgcaacacaggtacctgtgactacgccagccgcaacgac
aaatcctactggctttccaccaccgctgccgtgcccatgatgcccgtgtcgggccacgac
atccgcgcccatatcagccgctgtgccgtgtgtgagacaccctcacccgctgtggcagtg
cacagccaggattatatcgcccccacctgcccccctgggtggaggagtctgtgggctggc
tactccttcctcatgcactctggagcgggcgacgagggtggcggccaatctctgacctca
tccggcagctgcctgcgagacttccgtgcccagccctttgtggagtgccagggcccgcgg
ggcacatgccactacttcgccaatgtctacagcttctggctgacccatgtttccctggac
gagcagtttggccccggtcccgtccctagcgtgttgaaggctgccgatcaacagcgccag
caggccagccgctgccacgtgtgtaccaagggctga
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