Oncorhynchus gorbuscha (pink salmon): 124042640
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Entry
124042640 CDS
T07892
Symbol
tdp2b
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 2 isoform X1
KO
K19619
tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124042640 (tdp2b)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
124042640 (tdp2b)
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Gene cluster
GFIT
Motif
Pfam:
UBA_4
Exo_endo_phos
UBA_8
Exo_endo_phos2
TAP_C
Motif
Other DBs
NCBI-GeneID:
124042640
NCBI-ProteinID:
XP_046216671
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Position
LG09:complement(2557891..2565941)
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AA seq
379 aa
AA seq
DB search
MSNISKSVSTLEETRTGLCDEFVTVTGSDSAVAQCYLAENDWEMERALNSFFEADMEAVF
TVEDSPKKDISPPKVKRQKLDKPQGKIDCIDLTTEEPACSSSAKSTNSSKSVDPKAKVKT
SGSEEQADGKLSLISWNVDGLDTVNLGERARGLCSYLALYTPDVVFLQELIEPYVQYLKK
RAVSYTIIEGGEEGYFTGLMLKKSRVKLLNSDIISYPTTQMMRNLLVAQVTFRDQELCVM
TSHFESCKGQAEERMKQLSVVLKRIREAPTNVTVLFGGDTNLRDAEVTKVGGLPGGVCDV
WEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRVYLRPATEGPGSRMTPDHMALVGLEK
LDCGRYTSDHWGIYCSFIL
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatatctccaagtccgtgtcgactttagaagaaacgaggactggtctgtgtgat
gagtttgtgaccgtaacaggatccgatagcgccgtggctcaatgttaccttgctgaaaat
gactgggaaatggagagagctctgaactcatttttcgaggctgacatggaggcagttttt
acagtggaagattcaccaaaaaaggacatcagcccccctaaagttaaaagacagaaattg
gacaaaccacaggggaaaatagactgcattgacctgaccacagaagagcctgcctgttcc
agcagcgccaagtcgaccaactcctccaagtcagtggaccccaaagctaaagttaaaacc
tcgggctctgaggagcaggctgacggcaaactgtcactgatctcctggaatgtagatggt
ctggacaccgtgaacctgggagagcgtgcgaggggtctctgttcctatctggccctgtac
acccctgacgtggtgtttctgcaggaactcattgaaccgtatgttcagtacctcaagaag
cgagccgttagctacaccatcattgagggaggcgaggaggggtacttcactggtttgatg
ctgaagaagtccagagtcaaactcctaaatagtgacatcatcagttacccgaccactcag
atgatgaggaatctgctcgttgctcaagtgacattcagggaccaggagctgtgcgtgatg
acgtcccactttgagagctgtaagggacaggcagaggagaggatgaagcagctgagtgtg
gtgttgaagaggatcagggaggctcccactaacgtgactgtcctatttggaggggacact
aacctgagggacgccgaggtgaccaaggttggaggtctgcccggtggggtgtgtgacgtg
tgggagcagctggggaagcaggaacactgcaggtacacctgggacaccaaggccaacagc
aacaagactgtaccgtatgtcagcaggtgtcgttttgaccgcgtctacctccgaccggcc
acggagggccccgggtcccggatgaccccagaccacatggccctggtgggtttagagaag
ctggactgtggtcgctacaccagtgatcactggggaatctactgcagctttatcctttag
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