KEGG   Oncorhynchus gorbuscha (pink salmon): 124043108
Entry
124043108         CDS       T07892                                 
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013  Nucleocytoplasmic transport
ogo04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    124043108 (seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    124043108 (seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogo03019]
    124043108 (seh1l)
   04131 Membrane trafficking [BR:ogo04131]
    124043108 (seh1l)
Messenger RNA biogenesis [BR:ogo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     124043108 (seh1l)
Membrane trafficking [BR:ogo04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    124043108 (seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WDR90_beta-prop_4th EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 124043108
NCBI-ProteinID: XP_046217230
LinkDB
Position
LG09:889472..910432
AA seq 363 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVMRVYEAPDVMNLSQWSLQQEISSKLSCSCISWSPSSSRAHAP
MIAVGSDDSNTSYSGKVHIYEYIENTRKYAKAENLLMVTDPVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLIPLRRESAAGSSGPTKLQVQILAQFDNHNSQVWRVSWNISSTLLASSGDD
GCVRLWKANYMDNWKCTAILRGDGSPVTGSSSQAAVPSTAGGPQNVLLQASSAGRKKAQL
IPG
NT seq 1092 nt   +upstreamnt  +downstreamnt
atgtttgtcgctcgaagtattgcagcggaccacaaggatcttattcatgatgtttcatat
gatttccatggccggagaatggcaacttgctctagtgaccaaagtgtcaaggtgtgggac
aagagtgacaacggagagtggaactgcactgccagctggaagacccatagtggatcagta
tggagggtgacctgggcccatccagagtttggtcaggtgctggcctcctgctccttcgac
cggaccgctgctgtgtgggaggagatcgttggcgagtccaatgacaaacagcgaggactc
agtcactggatcaagaggaccactctggtggacagcagaacgtcggtgactgacgtgaag
tttgctcctaaacacatgggtctgatgctgaccacgtgctcagcagatggggttatgagg
gtctacgaggctccagacgtgatgaacctcagccagtggtccctgcagcaggagatctcc
tctaaactcagctgctcctgtatctcctggagcccctccagctctcgtgcccacgccccc
atgatagcagtgggctctgatgacagcaacacctcatacagcgggaaagttcacatctat
gaatacattgaaaacacaaggaagtatgctaaggcagaaaatctgttgatggtgacagat
ccagtccatgacattgcctttgctcccaacttgggacgctcttttcacgtgctcgccatc
gccaccaaagacgtacgcatcttcaagctgataccactgaggagagagtctgcagcgggg
tcgtctggtcccactaagctgcaggttcagatcctggcccagttcgacaaccacaactcc
caggtgtggagagtctcctggaacatcagcagcaccctgcttgcctcctcaggggatgat
ggctgtgtccgactctggaaagccaactacatggataactggaagtgtacagccatcctg
agaggagatggtagcccagtgactggctcgtccagtcaggctgcagtccccagcacagca
gggggaccacaaaatgtcctgctgcaagcgtcctccgctggaagaaagaaagctcagctg
atacctggctaa

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