Oncorhynchus gorbuscha (pink salmon): 124043146
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Entry
124043146 CDS
T07892
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03022
Basal transcription factors
ogo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124043146 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
124043146 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124043146 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124043146 (gtf2h4)
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124043146 (gtf2h4)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124043146 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
124043146
NCBI-ProteinID:
XP_046217335
LinkDB
All DBs
Position
LG09:complement(9818767..9835123)
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AA seq
462 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDQPLP
QAAVALWVKKDSEKDHDQCVSVLSGLRLWHSQQLQGGLQGNILNPVFKDNLRIALLGGGK
SWADQGDSLGPDRHARDVESLDKYALERWEVVLHFMVGCPSAAVSQDLSQLLIQAGLMRT
EAGDAPCITSAGFQFLLLDTASQLWYFTLQYLNTAQTRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLSAGVSANSSSTAMGATPG
TGDSGFIVVETNYRLYAYTNSELQIALVALFSECLYRFPNVVVAQVTRESVQQAIANGIT
AQQILHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLQFSEGVLYNQFLSQADFEV
LRDRAQGLGCLVWQNVAHRVIVVSPQGHGEVKRFWKRQKSHT
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgcgttcagttacaatgcaagaacctccatgagtatctgaaagagttgagc
ccagagatcttagaccgcttgtacaatcatccggccacatgtctggctgtctacagagag
ctccccccattggccaagaattatgtaatgcgaatgctgtttctagaccaaccccttcct
caggccgcggtggcgctttgggtgaaaaaagacagtgaaaaggaccatgatcagtgtgtc
tctgtgctgtctggtctcagactatggcacagccagcagctgcagggaggcctgcaggga
aacattctgaaccccgtattcaaagacaacctgagaatagcattattaggagggggtaag
tcgtgggcagaccagggtgacagtcttggtcctgacagacatgcccgtgacgtggagagt
ctggataagtatgctttggagcgctgggaggtggttctccacttcatggtgggctgtccc
agtgctgcagtcagccaggacctgtcccagctcctcattcaggctggcctcatgagaact
gaggctggagatgctccctgtatcacctcagctggtttccagttcctcctcctggacaca
gcctctcagctctggtacttcaccctacagtacctcaacacggcacagactcgtggaatg
gacttggtggagattctgtccttcttgttccagctcagtttctcgactctaggcagggac
tactcagtggaggggatgagtgaatctctgctcaccttcctacagcacctgagggagttc
ggcctcgtcttccagaggaagaggaagtctagaaggtactaccccaccaggctggccatc
actctgtctgctggcgtctccgccaactcttcctccaccgctatgggcgctaccccaggg
actggagattcaggtttcatcgtcgtggaaaccaactatcggctctatgcttataccaac
tctgagctgcagattgctttggtggctctgtttagtgagtgtctctatcgcttccctaac
gtggtggtggcccaggttaccagggagtcagtacagcaagccatcgctaacggcatcacc
gcacaacagattctccactttctaaggaccagagcacatcctgtcatgctcaaacagaac
ccagtgctgccccccaccatcacagaccagatcagactatgggagctggagagagatcga
ctacagttttctgagggagtgctgtataaccagttcctctcccaggctgactttgaggtg
ttgcgggacagagctcagggcctgggctgtctcgtgtggcagaatgtggctcacagggtg
attgtggtgtcaccgcagggacacggagaagtcaagaggttctggaaacgacagaagagt
cacacttga
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