KEGG   Oncorhynchus gorbuscha (pink salmon): 124043160
Entry
124043160         CDS       T07892                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124043160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ogo03041]
    124043160
Spliceosome [BR:ogo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    124043160
 Complex C
   U5 SnRNP specific factors
    124043160
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_2nd Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 124043160
NCBI-ProteinID: XP_046217368
LinkDB
Position
LG09:complement(11134777..11151809)
AA seq 348 aa
MIEQKKRPGDMALVPAGGVKRPRAELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKMIYGMHGHGDSLTGLCLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgattgaacaaaagaagagaccgggggacatggcgttggttcctgccggtggagtcaag
aggcccagggccgagctgatcgctgcggcacagtcgcaacaactcgtggccatgggccct
cctcgcagctccagcctgcaggctcccatcatgttgatgtgtggccatgagggagaggtc
tactgctgcaagttccatcctaacggggccacactggcctcctctggctatgacaggctc
atcttgatgtggaatgtgtacggggactgtgataactttgccaccctgaagggacacagt
ggtgctgtgatggagcttcactacaacacagacggcagcctgctgttcagtgccagcaca
gacaagactgtgggagtgtgggacagtgagacgggtgagaggatcaagcgtctgaaaggc
cacacctccttcgttaactcctgctaccctgctcgccgcgggcctcagctcgtctgtacc
ggcagtgacgacggaaccgtcaagctgtgggacatccgtaagaagggggcggtccatacg
ttccagaacacctaccaggtgttggccgtcacattcaacgacaccagcgaccagatcctg
tctggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagatgatctat
ggtatgcatggtcatggagattctctgactggcctctgtctgagctcagagggatcctac
ctcctctccaactccatggacaacacagtacgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaagatattccagggaaacattcacaactttgagaagaaccttctg
aggtgttcctggtctgctgacggcagcaagattgcagcaggctcagctgacaggtttgtg
tatgtgtgggacaccacgtctcgtaggatcctgtacaagctgccaggccacgccgggtcc
gtcaacgaggttgccttccatcccgaggagcctattgtcctctctggcgccagtgacaag
agactctacatgggagagattcagtag

DBGET integrated database retrieval system