Oncorhynchus gorbuscha (pink salmon): 124043428
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Entry
124043428 CDS
T07892
Name
(RefSeq) thrombospondin-3b-like isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04145
Phagosome
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124043428
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124043428
09144 Cellular community - eukaryotes
04510 Focal adhesion
124043428
09142 Cell motility
04820 Cytoskeleton in muscle cells
124043428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124043428
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124043428
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124043428
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Phagocytosis
Opsonins
124043428
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124043428
Exosomal proteins of colorectal cancer cells
124043428
Exosomal proteins of bladder cancer cells
124043428
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124043428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
124043428
NCBI-ProteinID:
XP_046217989
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All DBs
Position
LG09:complement(33890103..33924004)
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AA seq
955 aa
AA seq
DB search
MDMVRFVLNLLLASAAVLLGLTRASEMQVIDMLELHDARQSASEVGKMSGALGFVSDLYL
VSTLRLPPKLGGVLLGVYNKGDNRKYLEVALMGKVNKVLVRYVREDGKLHTVNLQNPGLS
DGRTQSLILRVGGLQRNHLHMELYVNCRLADSAQVLPSMVQLPAEAESVEIRNGQKAYAR
LQGSVDSLKLALGGSIAKAGILTDCPFQGDTHFQNSVSADVNAILGDHTKALIGQLIIFN
QILGELREDIREQVKEMSLIRNTILECQVCGFHETHSRCEPNPCYKGLACTETREYPGYR
CGACPDGMMGNGTHCQDIDECALARPCFSPEGCVNTAKGFTCEPCPVGFSGPILSGLGVE
FAKSHKQKCRDVDECAVLYKACVPNSVCINTEGSFRCGLCKESFVGNQTVGCFLRRSCAT
LGFNPCDVNAHCVIKGAARVSCECNVGWAGNGHTCGPDTDIDGYPDQPLPCIDNDYHCRA
DNCVNTPNSGQEDADGDGIGDQCDEDADGDGIKNVEDNCRLVPNKDQQNSDTDSYGDTCD
NCPNVPNGSQKDTDGNGAGDTCDNDIDGDGIPNVLDNCPKVPNPMQTDRDGDRVGDACDS
CPEVNDPMQSDTDNDLVGDVCDTNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGIGNECD
DDDDNDGIPDARPPGPDNCRLIPNPSQTDTNGNGIGDMCENDFDNDSVIDLIDVCPESAE
VTMTDFRNYQTVILDPEGDAQIKPKWIVLNRGMEIVQTMNSDPGLAIGYTAFNGVDFEGT
FHINTATDDDYVGFIFGYQDSSSFYVVMWKQTEQTYWQSLPFRAMAQPGLQLKAVKSRTG
PGEYLRNALWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQMGYIKVRLYEGMTL
VADSGVLVDTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYRKQIHIRV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggatatggtgaggttcgtgctaaatttgctgcttgcgagcgcggcggttctcttgggc
ttgaccagggcttcagaaatgcaagtgattgacatgctggagctgcacgatgccaggcag
agtgcgtccgaggtggggaagatgtcgggggctctgggcttcgtgtcggacctttacctg
gtgtcaactcttcgtctgccgcccaaactgggaggagtgctgttgggagtctacaacaaa
ggcgacaacaggaagtacctggaggtggccctcatgggcaaggtcaacaaagttctggtg
cgctacgtacgcgaggatggtaaactacacactgtgaacctccagaaccctggcctctcc
gatggacgcacccagtcactcatcctccgtgtgggtgggctccaacgaaaccacctccac
atggaactctatgtcaactgccgattggctgactcagcacaggtcctgccatccatggtc
cagctcccagccgaggcagagtctgtggagatacgcaacggccagaaggcctatgccagg
ctacagggctcagtggactctttgaaactggctttgggtggctctatagccaaagcagga
atccttaccgactgtccgtttcagggagatacacattttcagaattcagttagcgccgat
gtcaatgccattctgggtgaccacaccaaggctttgattggccagctgatcatcttcaac
cagattcttggcgaactccgagaggacatcagggaacaggtaaaggagatgtctctgatt
aggaacactatcctggagtgccaagtgtgtggcttccacgagacgcactctcgctgcgag
cccaacccctgctataagggcttggcctgtacagagaccagggagtacccagggtaccgt
tgtggtgcctgcccagacggcatgatggggaatggcacccactgccaggacattgacgag
tgtgctctagcccggccctgtttctcgcccgagggttgcgtaaacacggcaaagggcttc
acctgtgaaccatgtcccgtgggcttctccggacccatccttagcgggcttggggtggag
tttgccaagagccacaagcagaagtgcagagatgtggatgagtgtgctgtcctctacaag
gcctgtgtgccgaactctgtctgcatcaacacagagggctcgttcaggtgtggtctgtgt
aaggagagcttcgtaggcaaccagacggtgggctgtttcctgcggaggtcctgcgccacg
ctgggcttcaacccctgtgacgtcaacgcccactgtgtcataaagggtgctgccagggtc
tcctgcgagtgtaatgtgggctgggcaggtaatgggcatacatgtggcccagacacagac
attgatggctaccccgaccaacctctcccctgcatagacaatgactatcactgccgagcc
gacaactgtgtgaacacgcccaactctggccaggaggacgcagacggagacggtataggt
gaccagtgtgatgaagatgcggacggagacggcatcaagaacgtggaggacaactgccgt
ctggtccccaacaaggatcaacagaactcggacacagactcgtatggggacacgtgtgac
aactgccccaacgttcccaacggaagccagaaggacacagatggaaacggggctggggat
acctgtgacaatgacattgatggggatggtatcccaaacgtgctggacaactgtcccaag
gtgcccaatcctatgcagactgaccgtgatggggatcgagtgggggacgcttgtgacagc
tgcccggaagtcaacgaccccatgcagtctgatacagacaacgacctggtgggagatgtg
tgtgacaccaaccaggacatggatggggacggccaccaggattcaagggacaactgtcca
gacgtccctaacagctcccagctggactcagacaatgacggcatcggcaacgaatgcgac
gatgatgacgacaacgatggcattccagatgcgagacctcccgggccggataactgtcgt
ctcatccctaaccccagccagacagacactaatggaaatggcattggtgacatgtgcgag
aatgactttgacaacgactccgtgatagacttgattgacgtgtgtccagaaagcgctgaa
gtcacaatgaccgacttcagaaactatcagacggtcatcctggacccggagggcgatgcc
caaatcaaacccaagtggattgtgcttaatcggggtatggaaattgttcaaaccatgaac
agtgaccctggtttggccataggctacacagcctttaacggggtagactttgaagggaca
ttccacatcaacacggccacagacgatgactacgtgggcttcatcttcggttaccaggac
tcgtccagcttctacgtggtcatgtggaaacagacggagcagacctactggcagtcgctg
ccttttagggccatggcccagccaggcctgcaactaaaggcagtgaagtcacgtacgggt
ccaggcgagtacctccggaatgccctgtggcacacgggcgacaccccgggcgaggtcacc
ctgctgtggaaggacccccggaatgtgggctggagggacaagacatcctaccgctggcac
ctcagccaccgcccgcagatgggctacatcaaagtgaggctgtatgaaggcatgacattg
gtggcagactcgggcgtgctggtggacacctcaatgaggggcgggaggctgggcgtcttc
tgcttctcccaggagcaaatcatctggtccaacctgggctatcgctgcaacgatactgta
ccagaggactatgagttctaccgcaagcagatccacatcagggtgtga
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