Oncorhynchus gorbuscha (pink salmon): 124043574
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Entry
124043574 CDS
T07892
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124043574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124043574
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124043574
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124043574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
124043574
NCBI-ProteinID:
XP_046218245
LinkDB
All DBs
Position
LG09:complement(39633937..39657223)
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AA seq
923 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSSVTYTTENSED
DKKRGRSTDSEVGQSPIKNGNPSSSLSSSSSSSSSSSSSASSGASSSSLATIAGVGLPVT
GGNSLLGNMGGLLSNSGSYRDATQLQQHYHTQQARNSVISSNAPSNSNPSNNLLLPSPST
SSPANSSTTLPPLTPNTQLHAPSRPSPSSSLGLGLGLGLGKGGITGSPAVSQMSGLGLSG
MPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSVSSSSPNSGTVGPMGGNTVSDR
STGLLGSAPCAIGVSGGILSLSGLGSGQLAVQGPPLVASSPIGGLSPGSSLGAIGSIGGN
SGSGAPSTAITRPPSGQKQNGSTSYSAVVADSTPDSALNSASQLQSSQPSSLTSTTNQPK
DSGPSLLGPMILPTSSPSPSYSESKLPGSGMLNGPLSYTQTSESKPQEPLSTLKSMAERA
ALGSAMEEEMLPLHLTTDIFPSTTLPPGPPSAPQQPSLSEVSIPPSLGVCPLGPVPLSKD
QLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDSVEFYQRLSTET
LFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYE
KWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagcagacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcgtactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccaaactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgtccgtaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagtcgcctatcaagaacggc
aacccttcttcgtcgttgtcctcctcctcctcttcatcctcttcctcttcatcctctgcc
tcctcgggagcctcctcatcctcactggcgaccattgccggggttggcctgcctgtcact
gggggcaacagcctcctgggcaacatgggaggtctcctctccaactctggcagctacaga
gacgctacccaactgcagcagcattaccatacccagcaggccagaaactcagtcatctcc
tccaacgccccctccaactccaacccttcgaacaacctcctcctccccagcccctccact
tcctcacccgccaactctagcacaaccctccccccacttacgcccaacacccagttgcat
gctccgtcaaggccatcaccgtcctccagcttggggcttgggttgggcttgggccttggt
aaaggcggcattacggggtcaccggccgtcagccagatgtcgggccttggcttgtcgggg
atgccagcatccctaaacaccatggccgggctcctggcgggctcaacttcggccccctac
gccacggcagcagcaggctccggaaccatcggaagccccctagcagggaaaagcgtcagc
agtagcagccctaactccggcacagtgggaccgatgggcgggaacactgtcagcgataga
tccacgggcctgttgggctctgcgccctgtgcaattggtgtcagcggtgggatcctcagc
ctaagcggccttggctcagggcagttggcggtccagggccctcccctggtggcctccagt
cccataggaggcctgtcccctggaagcagcctgggagccataggaagcattggagggaac
tctggttcaggcgcgccaagcacggcgatcacaaggccacccagtggacagaagcagaat
ggtagcactagttacagtgctgtagtagcagacagcacacccgattccgccctcaatagt
gccagccaattacaaagcagccaaccctcgtctttgacctccaccaccaatcagcctaaa
gacagtggccccagcctcttagggcccatgattcttcccaccagctctccctcgccctcc
tacagcgagagtaaacttccaggcagcggtatgctcaacgggccactctcctacacacag
acctctgaaagcaagccccaggagcctctgagcactctaaagtctatggcagaacgagcg
gcactgggctcagcaatggaggaagagatgcttcctctgcacctcaccacagacattttc
cccagcactacattgcccccggggcctccctcggccccccagcagccctcgctttcagag
gtcagcatccccccatcgctgggcgtgtgcccactcgggcctgtgcccctgtccaaagac
cagctgtaccagcaggccatgcaggaatcggcatggacgcacatgccccacccctccgac
tcggagaggatcaggcagtacctgatgaggaacccatgtcccaccctgcctttccaccac
caggtgccacccccacactccgactctgtagagttctaccagagactgtccacggagaca
ctgttcttcatcttctactacctagagggcaccaaggcccagtatctggcagccaaggcc
ttgaagaagcagtcgtggcggttccacactaagtacatgatgtggttccagaggcacgag
gagcccaagaccatcacagatgagtttgagcaggggacgtacatttactttgactacgag
aagtggggacaacggaagaaggagggattcacgtttgagtacaggtaccttgaggaccga
gacctccagtga
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