Oncorhynchus gorbuscha (pink salmon): 124043703
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Entry
124043703 CDS
T07892
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124043703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124043703
03036 Chromosome and associated proteins [BR:
ogo03036
]
124043703
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124043703
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124043703
mRNA degradation factors
5'-3' decay
Decapping complex
124043703
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124043703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
124043703
NCBI-ProteinID:
XP_046218523
LinkDB
All DBs
Position
LG09:complement(45428049..45475856)
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AA seq
490 aa
AA seq
DB search
MASARTENLGPIGMGLNKQNGQLRGVPKPASPQSGPLVLGSLLSKAVGAPQKAGASLEGT
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKAYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDKTVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLGKGRQILLYSATFPISVQKFMAKHLHKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHTTNPNCGEWL
KETGRQQVEP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgcaagaacggagaaccttggccctatcggcatgggactgaacaagcagaat
gggcagcttaggggggtgcctaaaccggcctctcctcaatcaggacccctcgtcctgggc
tctctgttaagcaaggctgtaggtgcaccccagaaagcaggtgcttccctggagggaact
ggcattagatttggagatgactggaaaaagagcctacagctccctcccaaagacactaga
gtcagaacctctgatgtaacatccactaagggaaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatttttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccttgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggcttat
atacaggctattgtgatggtgcccactcgtgagctggccctgcaggtgagccagatcagt
atccagatcagcaagcacctgggcggagtgaaagtcatggccaccacaggtggtaccaac
ctgcgagatgacatcatgcgcctggacaagactgtgcatgtggtcatagctacacctggc
aggatcttggacttgataaagaagggcgtggccaaagtggatagagttcagatgatggtg
atggatgaggcggacaagctgctgtctcaggactttgtggtgctcatcgaggatatcatc
agcttcctgggcaagggccgtcagatcctgctgtactctgccaccttccccatcagcgtg
caaaagttcatggccaagcacctgcataagccctatgagatcaacctgatggaggagctg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaggtccactgt
ctcaacacactcttctccaggttgcagatcaatcagtccatcatcttctgtaactccacc
cagagagttgagctgctggctaagaagatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaatcgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcactgatctcttcaccagaggtattgacatccaggccgtcaat
gtcgtcatcaacttcgacttccccaagaatgctgagacatacctgcatcgcatcggacga
tcagggaggtttggccacctgggcctggccatcaacctgatcacctctgaagaccgcttc
aatctgaagtccattgaggaccagttggtcaccgacatcaagcctatccctggcagcatc
gacaagagcctgtacgtggcagaattccacaccaccaaccccaattgcggggagtggctg
aaggagactggccgtcaacaggtggagccctag
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