Oncorhynchus gorbuscha (pink salmon): 124043720
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Entry
124043720 CDS
T07892
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
124043720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
124043720
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
124043720
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
PDZ
PDZ_6
LIM
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
124043720
NCBI-ProteinID:
XP_046218563
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All DBs
Position
LG09:complement(47386832..47522011)
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AA seq
1238 aa
AA seq
DB search
MAVDSNKDSLHYRRSLVIAPKTTTQFNQFLPTKDKPAAYVPAPLRKKRAERHEDSRRSWA
SPKYTEEDGTFTRLLQKYDVASDGSKSMTDLVVDQDALKQVRYEELQKIREQVKENEDQW
QDDLTKWKNRRKSFNSDIVKKKEEREQTTASSGIGSRGFQNSNWSSIGSRLNSLASLDQD
VFEDSAPVLRTLPLRSYTFDNPYTPLDRLRPTSSSVLPPREEACAATTATNRAVSPSRGN
MSDSIADSPFGSGSDITTTVDRTSNYNPYVPAPNPSERAPNLASWYTSAAKTEETFSTTT
TPSLLPKAHEPSRPWVGKVSEEVTPSTAGGSLYIQQPQYNSVVMDPQPMPSGVSRVSASL
PRSYMRSDRARLNSVVMPRPFGSQSTSVASLPPAYTAPLMADSQKSVNGETDFIKKLSAP
SRYIQVMTSEDKAHSLSSSAHNSGEEEEKKKKRGVTPTLATTLVPTLAPSPVPSQARSPS
PALQTPKVAYTAPVSPLPTKDTNQESYADMRISLNQKPNSSRDFGFQTEWDSTGAHVTSI
QPGSPAELCQLQVGDEVMSVNGQRVAEMSYDKWKSSTEQVLQQGSLTMDIRRHGRNNWDR
DLPSLPFKSHKTINLTSMDHHPTVIGFPDTTTVNTTTSLDFTSRRSMETTKKVTTQPIIG
VASNGVNGGFRDETVTVRNKEPISMKNFKRRSEFFEQGGSESAKSDMPVASIAPSSNRLS
CDPEEERRRQEKWQKEQERLLQEKYRRDQEKLEEEWRRAQQEAVTEGGRHHQEEPRGLEM
DSRSISPLSPLRQPTMPWEDKEAQEEERGRRVEEEAQRRQEEEERRRVEEERQKWEEGRR
TEEKEQELLPLQEERQREKQEDEERRQGQKEELRWQRRKEEEREERRCQEAAEQQHREKE
KMQEQQQQWAKSKSTPELDDVEKTKGWYGSSGGMAQRLLEEELRRKADKKAQSLRAASEL
ELERRNILNAMRYREPERVTSSYGIGEGLGRKGQQSVPQAELERQQILQEMKKKTNLATD
NSWIRQRSTSTTNRKDPTASPIRRGESLDNLDTAPRSSWRSSWTPGSTSSIPNYSRPHFA
LSGLKTTSSYSGVAYGGGGYGSGVGSCPGLATLPSSLSMSSLREARGCNLSSWSLRSPSP
SPTPSLGPEPESRPSSHQRSRSVSGKKVCTFCDTVLGKGAAMIIESLGLCYHLTCFKCID
CKSDLGGSEAGAEVRIRNRQLYCNSCYMRFKTGQPTSM
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggacagtaacaaggattcgctgcactaccgccgctctttggtcatcgcaccc
aaaacgaccacacagttcaaccagttcctgcccaccaaggacaagccggcggcctacgtg
ccagcacctctccgcaagaagcgggccgagcgccacgaggacagccgccgaagctgggcc
agccccaagtacactgaggaggatggcaccttcaccagactgctccaaaagtatgacgtt
gctagcgatgggagcaaatcaatgacagaccttgtggtggaccaggatgccctgaagcag
gtgcgttacgaggagctacagaagatcagagagcaggtcaaggagaacgaagaccagtgg
caggatgatctcaccaagtggaaaaaccgtcgcaagagcttcaactctgatattgtgaag
aagaaagaggagagggagcagaccacagcgagcagcggaatagggagccgcggtttccag
aattccaattggagctccatcggcagtcgcctcaactccctcgcctctctggaccaggac
gtgtttgaagactccgccccggtcctccgcaccctccctctgaggagctacaccttcgac
aacccctacacccctcttgaccgcctcagacccactagctcctccgtgctccccccaagg
gaggaggcgtgcgctgccaccacggcaaccaacagggctgtctcgccttctaggggcaac
atgagtgacagtatcgccgacagtcccttcggttctggtagcgacatcactaccactgtg
gatcgcacctccaactacaacccctacgttccagccccaaatccttcagagagagcccca
aacctggcctcatggtacaccagtgcagccaagacggaggaaaccttcagcaccaccacc
acccccagcctactacccaaagctcacgagcccagtcgcccatgggtggggaaggtgtct
gaagaagtgaccccatccactgctggtggctctctgtacatacaacagcctcagtacaac
tcggtggtgatggacccacagcccatgccttctggtgtgtctcgggtttctgcctctctc
cccaggagctacatgagatcggacagagctcggctcaactctgtcgtcatgccaaggccc
ttcgggagccagtctacaagcgtcgcatcactgccacccgcctacaccgctcctctgatg
gctgactctcagaaaagtgtgaacggagagacggatttcatcaagaagctgtcggccccc
agccgctatatccaggtcatgacctctgaggataaggcgcactccctctccagctctgcc
cacaacagtggagaagaagaagaaaaaaaaaaaaaaaggggtgtgacccccacacttgcc
acaacacttgtccctaccctggccccttctcctgtcccttctcaggccaggagtccttca
cccgccctccagaccccaaaagtggcctacacagccccagtcagtccgttacctacaaaa
gacactaaccaggagagctacgctgacatgcggatcagtctcaaccagaagcccaacagc
agtcgagactttggcttccagacagagtgggactccactggagcacacgtcacctccatc
caaccaggcagcccagccgagctgtgccaactgcaggtgggcgacgaggtgatgtcggtg
aacgggcaaagggtggcagagatgagctacgacaagtggaagagcagcacagagcaagtt
ctgcagcagggaagccttaccatggacatacgccgtcacggcaggaacaactgggacaga
gacctaccttccctgccgtttaaaagccataagaccatcaatctgaccagtatggatcat
catccaacagttataggtttccccgacacaaccaccgttaacacaaccaccagcttggat
ttcacctctcggcgatccatggaaaccaccaagaaggtcactacccaaccaatcattggt
gtagcatccaatggagtgaatggaggcttccgtgacgagacagtgaccgtgagaaacaaa
gaacccatatccatgaaaaattttaaacggaggtcagagttttttgaacaaggaggatca
gagtcagcaaaatcagatatgcccgttgcctccatcgctccctcctctaaccgcttgtcc
tgtgacccggaggaggagcgcaggaggcaggagaaatggcagaaggagcaggagagactc
ctacaggagaaataccgtcgtgaccaggaaaaactggaggaggagtggcgtcgggcccag
caggaggctgtgacagaagggggaagacaccaccaagaggagccgaggggcctggagatg
gacagcaggagtatcagccccctctcccccctccgccagcctaccatgccctgggaggac
aaggaagcccaagaggaggaaagggggaggagggtagaagaggaagcacagagaagacag
gaggaggaagagaggaggagagtggaggaggagaggcaaaagtgggaggaggggaggagg
acggaggagaaggagcaagagctgctgcctcttcaggaggagaggcagagggagaagcag
gaggatgaggagaggagacaggggcaaaaggaggagctgagatggcagaggagaaaggag
gaggagagggaggagaggaggtgccaggaggctgctgaacaacaacacagggagaaagag
aaaatgcaggagcagcagcagcaatgggcaaagtcgaaatctactccagagctggacgat
gtggagaaaactaaaggctggtacggcagctcggggggcatggcccagaggttactggag
gaggagttgagacgtaaagcagacaaaaaggcccagagtctccgggctgcatcagaacta
gagttggagaggagaaacatcctaaacgccatgagatacagagagccagaaagagtgact
agcagctatgggataggcgaaggattggggaggaagggccagcagagcgtaccccaggcg
gagctggagaggcagcagatcctacaggaaatgaagaagaagaccaacctggccacagac
aacagctggatccgccaacgctccaccagcaccaccaaccgcaaggaccccactgccagc
cccatcaggagaggcgagtctctggacaacctggacaccgcgccccgttcttcctggcgc
tcgtcatggacaccgggaagcacctcgtccatccccaactacagccggcctcattttgcc
ctttctggcctcaaaactacatcctcctatagtggtgttgcctacggtggtggtggctat
ggcagcggggtcggaagttgtcctggcttagccaccctgccctcctccctctccatgagc
tccctcagagaggccagggggtgtaacctatcttcctggtccctgcgctcaccctcgcca
tcccccaccccttctcttggccccgaacccgagtcacgcccatcctcacatcaacgcagc
aggtcagtgagtggcaagaaagtctgtacgttctgtgacacggtgctgggcaagggagcc
gccatgatcatagagtccctgggactctgctatcatttgacctgtttcaagtgtatcgac
tgtaagtctgacctaggaggatcggaggccggagctgaggtcagaatacgtaaccgacag
ctctactgtaactcctgctacatgcgattcaaaactggacagccaacgtccatgtga
DBGET
integrated database retrieval system
