Oncorhynchus gorbuscha (pink salmon): 124043729
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Entry
124043729 CDS
T07892
Symbol
arid1aa
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124043729 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124043729 (arid1aa)
03021 Transcription machinery [BR:
ogo03021
]
124043729 (arid1aa)
03036 Chromosome and associated proteins [BR:
ogo03036
]
124043729 (arid1aa)
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Helix-turn-helix
ARID
124043729 (arid1aa)
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124043729 (arid1aa)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124043729 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
124043729
NCBI-ProteinID:
XP_046218588
LinkDB
All DBs
Position
LG09:49467188..49487862
Genome browser
AA seq
2330 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDPHEDSILGEKQQENKQPGLECGSPVRGDLQDGADV
GNAGGGGEPEMKNGNGNPSRTNNNQNDSIGSEGNNHPGMVHHHGSGFPPPSYGYSQHYGR
APFHQHGGQQSPGMAAAAGPAVPSSNMMDPYQPNSHEHGFSNHQFNNYNPFPNRTPYSGQ
GYGMNPSRNTQAPAAGGQPANVKQQPAGGPTAMAASYNNQRYNMGNPQPTSTPTLNQLLT
SPSSTRIYPNYPSSEYSNQEGASKGPTDTGSSGQYGGGSPGWQQRTHHPPPMSPGSTGQP
LGRSQPPGAMDPMAKLRGQPYGGGSPYSQQPGQGPPPGAQQGHAYPGQGYGPLGSQRYPV
VMQGRIPGAMGGMQYGQQMPSYGQQGPGGYGPQGQGPFYSQQGQALHPGQQQGPYPQAPL
GQQGGQTPYPQQSHPPQTSASHAQGGPPYPQPHMPPQSQGPQPVPSQGPPQSQPPYSQGP
AQAQSGQPPYPQQQGPPSQQASSQVPAGSQAQLSYPPTQGPQQLPTQQQQQPQTPSQPPQ
QPPGHSQHPQGQPASYSQNPPQQQQSPYQRFPPPPQQEISQDSFSSQSSAPPSNQPKSVS
EDVSMQGQPSSLPDLSGSIDDLPTGTDGALSPGVSTSGVSSSQGEQSNLAQSPFSPHXSP
QLPGIRGPSPSPAGSPASATTSRTGPLSPVTMPGTQMPPRPSSVQSDGSLHPAMSQSPMA
QERGFVQRNPQMPPYGSPQSASPLSPRQSSGGQMHPGMGPYQQQNNSMGGYGPQGGQYGP
QGYPRQPGYNNMPNANYPGTGMGNPMNPGPGMGKPINPMSGQGGLPYAGIPPGRMPAGQM
GVRPYGPNMGPNMPPNMSNMPPQVGSGMCPPPGLNRKAQEAAAVVMQHAATNSIHSRMPG
YPNMSPGMMGSGAPYGPPMNNMPGMMNTQGGPPFPMGPNMANNSSGLAPSPEFGMDGKMN
QGQKMNNKVDGTPKAEPTKSKKSSSSTTTNEKITRLYELGPELERKMWVDRYLGFIEEKA
MGMTNLPAVGRKPLDLFRLYVSVKEIGGFAQVNKNKKWRELSTNLNVGTSSSAASSLKKQ
YIQCLYAFECKIERGEDPPPEIITDNKKANQAKVQPPSPAGSGSLQGPQTPQSTSSSMAE
GSDLKPPTPASTPHPTQMPPGARSNVALQDPFADSSDPAFPRRNSMTPNSGYQSGMSTPE
MPGRMGPGPYEGPGPNKDPFGAMRKVGEQFLPASQGPNSGMAEQQQFNRGPPPGAMGNMS
MAQRQQYGPGPYGQGYERRPEQGMGPEGSMGSGAPQSNLMPVNSDTGMYSPNRYPPQQQP
RNDSYGNQYPGHGTPPGGSYPNQQPGMYPQQQQNYKRPVDGGYPPAKRHEGEMYSAPFSA
GLQQQQPQQQPGVASAPPAGQPEMYQPQYSSGSFTGTDRRLPGPQGQFPFPFNRERMQAA
TGPNAQPSMPPQIMQPSPDGSPGGVWQGRGEMNYPGNYPNRQGGPPGGPAQGPGHPGMNR
GSEEMSSEQRMNHEGQWGPGQMGPRQPPYGPGGTGPPMTRTLQSNYQSAQAMQNHIPQVS
SPSPMPRGGPMESRTSPSKSPYMHSGIKMQKAGPPVPASHIVPQSVQSPLIRRDMPFPPG
SVEATHPILKPRRCLTTKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSISTF
NLNSLPGLLELVVEYFRRCLIEIFGILREYEVGDPGQRTLLDPDALKRDWSCMEDEEPGV
EDMKVEGEEEDDDDDEEEEEEEEEDVVVQRSKQPAGTTIDGQAQVKQEDEQESCSEWDTL
KEKDAEDKEKSCSTFEQPSSSSEPPGLGPATPQERPKQASKFDKLPLKMVRKKDPFPAGR
ATRRGKVQEFDSGLLHWSAGGGDSTEHIQTHFERREEFLVPRERVLVVPTAKRKRPEPEK
AGDKDNATPTEKYKQKGERDQRPSQPSSTEKASTTTDGKEGKSEHSDAETEEMSQPEEPH
RQQEHDKSSRPTRQQVPQRVVEDEPHSKDEGPLVTLANWQDALARRCVCVSNIVRSLSFV
PGNDQEMSKHPGLMLLLGRLVLLHHRHPERKQAPLTYEKEEESDDCLGQRDEWWWDCLSL
LRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSAEAQDPFPTLGPHSAMSPQ
RLVLETLSKLSIQDNNVDLVLATPPLGRLEKLYGTLVRLVGERKVAVCREMSVVLLANLA
QGDSMAACAIAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSNDMMRRAA
RALHALAKVEENHSEFTLYESRLLDLSVSPLMNSVVSHVICDVLFLIGQS
NT seq
6993 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactctcaacacaagcccgccttccgaactaaag
aaaccggatcgagacccacatgaggattctatactgggggaaaagcagcaggaaaacaag
cagccgggattagagtgtggatctccggtccggggggatctgcaggacggggccgatgtt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaacgggaacccttccagg
actaataataatcagaatgattccatcggatccgaggggaataaccatcccgggatggta
caccaccatgggtctggttttcctccaccttcttatggatacagtcaacactacggccgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcaggtcca
gccgtgccgtcgagtaatatgatggacccatatcaacccaattcgcacgaacatggcttt
tctaaccaccagtttaacaattacaatccattcccgaacagaactccctattctggccaa
ggatacggcatgaacccctcacgtaatacccaggctccggcagctgggggacagccagct
aacgttaagcagcaaccagcaggaggacccacagcaatggctgcatcttacaacaaccag
agatataatatggggaatccacagccaacgtctaccccaaccctcaaccagctcctaacc
tctccaagctccactcgtatatatccaaattacccctctagtgaatatagtaatcaggaa
ggcgctagtaagggaccaacagacacgggcagtagcggtcagtatggaggggggagtccg
ggttggcaacaaaggacccatcatccgccgcctatgagccctggaagtacagggcaaccc
ctaggtagaagccagcccccaggtgcaatggatccgatggctaagttgagaggccagccg
tacggagggggcagtccatactcccaacaacctggacaggggccacccccaggagcccag
cagggtcacgcatacccgggccaaggctacggtccccttggctcccagagatacccggtg
gtcatgcagggccgcatccctggggctatggggggcatgcagtacgggcagcagatgccg
tcttatgggcagcagggaccaggaggctatgggcctcagggccaagggcccttctacagc
caacagggccaggctttacacccaggccagcagcaagggccctacccccaggcacctctg
ggacagcagggtggtcagacaccctaccctcagcagtcccaccctccccagacgtcagcc
tcacatgcccagggtgggccgccctatccgcagccccacatgcccccccagtcccagggc
ccgcagccagttccatcccaagggcccccgcagtctcagccgccctactcccagggccca
gcccaggctcagtctggtcagcctccttacccccagcagcaggggcctcccagccagcag
gccagctcccaggtcccagcagggtcacaggcccagctcagctatccacccacgcagggc
ccacagcagctccccacacagcagcagcagcaaccccagacaccctctcaaccccctcag
caaccaccaggtcacagccagcatccacagggccagcctgcatcctactcccagaatcct
ccacagcaacagcagtcaccttaccaacgcttccctcctccaccacagcaggagatatcc
caggactcgttcagttcccagtctagcgcccctccctccaaccagcccaaaagtgtctca
gaggacgtcagcatgcaaggccagccgtccagcctaccggatctctcaggctccattgat
gacctacccacgggcacggatggcgctctgagtcctggcgtgagcacttcaggtgtgtca
agcagccagggcgagcagagcaacctggcccagtcgcccttctcgccccacnnctctccc
cagctgccaggcatccgagggccctcaccgtcacccgccggctcccccgccagtgccaca
acctcccgcacggggcccctctcacccgtcacaatgccagggacccagatgccccctaga
ccatcgagtgtgcagtctgacgggagtctgcaccccgccatgagccagtctcccatggcc
caggagagagggttcgtacagagaaacccccagatgcccccatacggttcaccacagtct
gcctctcccctgtcaccccgacagtcctctggaggccagatgcaccctgggatgggacct
tatcagcagcagaacaactccatggggggctatggacctcagggtgggcagtatggccca
caaggttacccccggcaacctggatacaacaacatgcccaatgccaactaccctggcact
ggcatgggcaaccccatgaaccctggccctggcatgggcaaacccataaaccccatgtct
gggcaaggggggctgccgtacgcaggcatcccccctggtagaatgcctgcgggccagatg
ggagtgcgtccctatggccctaacatggggcccaacatgccacccaatatgagtaacatg
ccacctcaggtgggctcagggatgtgccctccccccggcctcaaccggaaggcccaggag
gctgcagctgtagtcatgcaacacgctgctaccaactccatacacagcaggatgcctggc
taccccaacatgtcccctggcatgatgggctctggcgccccctatggccctcccatgaac
aacatgcctggcatgatgaacacgcagggcggcccacctttccctatggggcccaacatg
gccaataactccagtggtttggcccccagtccagagtttggtatggatgggaaaatgaac
cagggccagaagatgaacaacaaagtggacggaacaccgaaagcagaaccgactaaatcc
aagaagtcaagctcttccacgacgaccaacgagaagatcacgcgtctgtatgagctgggc
cccgagctggagaggaagatgtgggtggaccgctatctgggctttatcgaggagaaagca
atgggcatgaccaatctgcctgctgttggccgcaagcccctagacctcttcagactctac
gtctcggtcaaggagattggaggcttcgcacaggtgaacaagaacaagaagtggcgggag
ctgtccaccaacctgaacgttggcacttcgagcagcgctgccagctccctgaagaagcag
tacatccagtgtctgtacgccttcgagtgcaagattgaacgcggggaggacccccctcct
gagatcatcactgacaacaagaaggccaaccaggccaaggtccagccaccctccccagct
gggtcaggttctctccagggccctcagaccccccagtccaccagcagctccatggccgag
ggcagcgacctcaagccccccacacccgcctccaccccacaccccacccagatgccaccc
ggggccaggagcaatgtggcgctgcaggacccatttgctgacagtagtgaccctgctttc
cccagaaggaactccatgacccctaactctggctaccagtctggcatgagcaccccagag
atgccaggtcgcatgggtccagggccctacgagggtccagggcctaacaaagaccccttt
ggtgccatgcggaaagttggggagcagttcttgcctgccagtcagggtcctaatagtggg
atggctgaacagcaacagtttaaccgtgggcctcctccaggtgctatggggaacatgtcg
atggctcagagacaacagtacggaccaggaccttacggacaaggctacgaaaggaggcca
gagcaggggatgggcccagagggcagcatgggatctggtgctccgcagtcaaacctgatg
cctgtcaactccgacacggggatgtactcgccaaaccgctacccaccacagcagcagcca
cggaatgattcctatggtaatcaatatcctggccatggtactccccctggtggttcctat
cccaatcaacagccaggaatgtacccacagcaacaacagaactacaagcgtcccgtggat
gggggctacccaccagcgaagcgtcacgagggggagatgtacagtgcccccttcagtgca
gggctgcagcaacaacaaccgcagcagcagccaggggtggcctctgcaccccctgctggc
caaccagagatgtaccaaccccagtacagcagcggctccttcaccggcactgaccgccgc
ctgcctggtccccagggccagttccccttccccttcaacagagagcgcatgcaggccgcc
acggggcccaacgcccagccctccatgcccccacagattatgcagccaagccctgacgga
tccccgggtggcgtgtggcagggccgcggggagatgaactatcccggcaactaccccaac
cggcagggtggccccccagggggcccagcccagggacctggccatcccggaatgaaccgc
ggttcggaggaaatgtcatcagagcagcgcatgaaccacgagggccaatgggggccaggt
cagatgggccctcggcagcccccctacggccctggagggacgggcccgcccatgacccgc
acactacagtccaactaccaatccgctcaggccatgcagaaccacattccacaggtgtcc
agtccctcccccatgccccgcgggggccccatggagagccggacgtcacccagtaaatct
ccctacatgcacagtggcatcaagatgcaaaaggcagggcccccggttcctgcctctcac
atagtgccccagtctgtgcagtcccctctgatccgtagagacatgccctttcccccaggc
tcagtggaggccacccaccccatcctaaaaccacgccgatgcctcacaacgaaagatatc
gggaccccagaggcttggagggtgatgatgtccctaaagtctggcctgttggctgagagc
acgtgggccctcgacaccatcaacatcctcctgtatgacgacaacagcatctccaccttc
aacctcaattcgctgcctggcctgctggagctggtggtggagtacttccggcgctgcctc
atcgagatctttgggatcttgcgcgagtatgaggtgggcgatcccggccagaggactcta
ctggaccctgacgccctgaaaagagactggagctgcatggaagatgaggaaccaggggtg
gaggacatgaaggtagaaggagaggaggaggatgatgatgatgatgaggaggaggaggag
gaggaggaagaagatgtggtggtgcagcgttcaaaacagccggccgggacgacaattgat
ggacaggctcaggtgaagcaagaggatgagcaggagtcgtgctcagaatgggacactctg
aaagagaaggatgctgaagataaggagaagagctgctctacctttgagcagcccagctct
tcatcggaaccccctggcctaggcccggctaccccccaggagagacccaaacaggctagc
aagttcgacaagctccccctgaagatggtacggaagaaggacccgtttccagcaggcagg
gcaactcggagaggaaaagtgcaggagtttgacagtgggctgctccactggagtgccggc
ggcggagacagcacggaacacatccagacccactttgagaggagggaggaattcctggtc
ccacgagaacgagtgctggtcgtccccacagccaagaggaaaaggccagaaccagagaag
gcgggggacaaggacaatgctacccccacagagaaatacaaacagaagggggagagggat
cagaggccctcccagccatcatccacagaaaaggcctcaacaacaaccgacggtaaggag
gggaagtccgagcactcggacgctgagacagaggaaatgtcacagcccgaagagccccat
cgccagcaggagcacgacaaatcgagcagacccactcgtcagcaagtcccccagcgtgtg
gtggaggacgagcctcacagcaaggatgagggcccactggttacactggccaactggcag
gatgctctggcccgccgctgtgtctgcgtctccaacatcgtgcgcagcctctccttcgtg
cctggcaacgaccaggagatgtccaaacaccctggcctcatgctgctgctcggtcgccta
gtgctgctgcaccaccgccaccctgagaggaaacaggccccgctcacctacgagaaggag
gaggagtctgatgattgtcttggccagagggacgaatggtggtgggactgcctgtcgctg
ttgagggagaactgcctggtcactctggccaacatctctggccagctggacctctccatc
taccccgagagcatctgccttcctctgctggacggcctcctccactgggctgtgtgcccc
tcggctgaggcccaggaccccttccccacgttggggccacacagcgcaatgtccccccag
agactggtcttggagacactcagcaagttgagcatccaagacaacaatgtggacctggtc
ctggccacgccgccgttgggtcgtttagagaagctgtatgggaccttggtgcggctggtt
ggggagagaaaggtggccgtctgcagggagatgtcggtggtgttgttggccaacctggcc
cagggagacagcatggcagcgtgcgccattgctgtgcagaagggaagcgtgggaaacctc
ctgggcttcttggaggacagcctggcggccacccagctacagcagagccagagctctctg
ctgcacctgcaggggatgcacttcgagcccaccagtaatgacatgatgcggcgggcggcc
cgggccctgcacgccttggccaaggtggaggagaaccactcagagttcacactctacgag
tcacgcctcctcgacctctccgtgtcacctctcatgaactctgtggtgtctcacgtcatc
tgcgatgtactctttctgattggccagtcatga
DBGET
integrated database retrieval system
