Oncorhynchus gorbuscha (pink salmon): 124043741
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Entry
124043741 CDS
T07892
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124043741
03015 mRNA surveillance pathway
124043741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124043741
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124043741
mRNA cycle factors
P-body specific factors
124043741
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
RRM_1
Motif
Other DBs
NCBI-GeneID:
124043741
NCBI-ProteinID:
XP_046218614
LinkDB
All DBs
Position
LG09:50361820..50389310
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AA seq
490 aa
AA seq
DB search
MRSEKDQVPGGREKSVVEIQFRDIPREQDAVFVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYCRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRREMEKKRQREEEKRKRREEER
RKRKEADKLKKLSEKEIKIKLLKKSDRDDDMDSDRLKDKGDSGDTERAKWDKPSGQMKFK
EAKDKGQIESDKGEHGRRQRDKDHRGRDEERKRQRHHYEFDKFIRRKEETKWGKGYCQDR
AKKDGHHHGSYSYCPSTGDKVGKEDREGIGASRKDRTRNKVSDKACVSQSVLAHQDRGTS
QSEGPHQIGGALPNKDRPAMQLYQPGTRKCMGSASKGYELPIGQSPEHVAVDHCNEAIAM
GTGSEKSSED
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaagtgcccggaggtagggagaaaagtgtcgtcgagatacaa
tttagagacattccgagggaacaggacgccgtctttgtcaactcaaagcagaaagaagag
aagaaggaggtatttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctttgactactttgagttcttccctgca
gatcaaagcctctacccacacttgttctccagagcttacatcaacttcaaaaacccagag
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgcaccctttcagaaagtatccaagaagaaactcaaa
aagaaagatgccaaagccggaagcattgaagaagacccagagtactgtcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaagggaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcagaggataagagaggagaagagagaggagcgtcgacgcagg
gagatggagaagaaacgccagagggaggaggagaaaaggaagcggagggaggaggagaga
cgcaaacgcaaggaggcggataaactgaagaagctgtcggagaaggagatcaagataaag
ctcctaaagaagagtgaccgggacgatgacatggactctgacaggctcaaggacaaaggg
gacagtggggatacggagagggccaagtgggacaaacccagtggacaaatgaagttcaag
gaagccaaggacaagggtcagattgagagcgataagggagaacacggccgcaggcagaga
gacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactatgagttt
gacaagttcatacggcgcaaggaggagaccaagtggggcaaaggctactgccaggaccgg
gccaagaaagatggccaccaccacggctcctactcctactgccccagtacgggtgacaag
gtgggtaaggaggacagggaaggcattggcgctagcaggaaggaccgcacccggaacaag
gtgagcgacaaggcttgtgtctctcagtctgtgttagcccatcaggacagagggacgtcc
cagtcagaggggccacaccagataggaggggccctgccaaacaaggacagaccggccatg
cagctctaccagcctggcactcgcaaatgcatgggctcagcgagcaaaggttacgagctc
cccatcggccagtcgccagaacacgttgcggtagatcactgcaatgaggccattgccatg
ggaacaggctcggaaaagagtagtgaagattag
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