Oncorhynchus gorbuscha (pink salmon): 124043750
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Entry
124043750 CDS
T07892
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124043750
00535 Proteoglycans [BR:
ogo00535
]
124043750
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124043750
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124043750
Proteoglycans [BR:
ogo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
124043750
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124043750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
3keto-disac_hyd
DUF1554
Motif
Other DBs
NCBI-GeneID:
124043750
NCBI-ProteinID:
XP_046218629
LinkDB
All DBs
Position
LG09:52752423..52943188
Genome browser
AA seq
1481 aa
AA seq
DB search
MDCKIGFQLGVSFLLVLLLGRSEALWFSWSSTDGTTEAPTLDNEGSGNPVASGKSQKPDN
VGEDGAEIIDVASGKRKFVQTWDQTLKATETHKLTTVGSQAGNERPIEKDAHGSTSRGGK
PDESSVSLLQLIGDPPPAEITKVYGPDNSPGYVFGPDANTGQLARAHLPSPFYRDFSLLF
NLKPQSTNGGVIFSVTDPLQQIMYVGVKLSPVKANRQNVIFYYTEPDSQESYVAATFPVH
NLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMELESGAGVFVGQAGGADPNK
FLGVIGELRVVGDPQAAERQCEEEGDDSDAASGDGGSGDERIPDGEKKGSGTSIWDAKIR
KYVLVEGVRLTVTTTPTSSRPIQQPPVTRKQPEVSPTKVRDQGGSRGEKGDRGEKGDRGP
IGSKGDSGSESGTRGGARGEKGVLGEKGMKGKAGFGYPGSKGDPGPAGPPGPPGLPGPAA
EVVSRGDGSVVQTVAGPRGPAGPPGASGPEGPAGADGEPGDPGEDGSQGPVGPPGFPGIP
GDPGLKGEKGDRGEGQPGPRGPPGPPGQPAPTRHDRPTFADMEGSGFPDLETLRGLPGLP
GPPGLPGAPGTSVVGTGVSGLFGPKGPPGQDGAPGQPGLHGLPGADGRPGAAGAGGEKGD
PGELGLPGAVGAKGAQGLNGIPGQPGQGGLAGLPGPMGPLGQPGPPGPPGPSYRVGFDDM
EGSGVGVANGVPGARGPEGQQGPPGIPGLPGRSGFPGIPGEKGSEGPQGSDGRPGLDGFP
GPNGQKGDSGDRGERGESGRDGNGQPGPPGPPGPPGQIIYQTSSSYDGVVGGAGPQGQAG
FPGPIGPKGDMGDPGQPSYGVKGEKGEPGSIIGPDGNTLYLGRLSGEKGDRGPAGPVGPP
GQYGSPGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFSYPGVPGPPGPPGPPGPAVPV
DRFNGYDASRNYPVTKGEKGDFGAQGLPGTPGVASNFDIFTFKNDLKGEHGDAGVKGEKG
EPSGGYYDPRFGRQQGPPGPPGNPGLMGPKGDSITGPPGPQGPPGSPGIGYDGRPGNPGP
PGPPGPTGSHSLPGAYRPTHPISIPGPPGPAGPPGIPGHTSGVTVLRSYDTMIATARRQS
EGTLIYIVDKTDLYIRVRNGFRQIMLSDYSPFYRDLDNEVAAVQPPPVVNYPQSQDHSAN
NGAEQFSQGGAATHPIVPPPRQPIEISRPAQPNNRDPRDPPQYDHRYPSQTDPRYPPQTD
GRYSPVQPENRYPTQPERLYHITPQRQPVPPPVPQPAGHVHTSGPGLHLIALNTPQVGNI
RGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSLPILNLKDHVLFNSW
ESLFSKTEGRMEENAPIYSFDGRDILKDSAWPEKMVWHGSTIEGHRQTDNYCETWRAGDR
AVTGLASSLQTGQLLQQLPSSCSSSYIVLCIENSYLSHSKK
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atggattgcaagattggattccagctgggtgtctcttttttactggtactcttgttgggt
cgtagtgaggcgttgtggttttcctggagcagtacagacggcaccactgaggccccaacg
ctggacaatgagggatctgggaaccctgtggctagcgggaaatcacaaaagccagacaac
gttggagaagatggggcagagatcattgacgtagctagtgggaaacgtaagtttgtacaa
acttgggaccagactttgaaggccacagagacccacaagctgaccactgtggggtcacaa
gccgggaatgagcgcccaattgaaaaggatgcccatgggtccacgtcgaggggaggtaaa
cctgatgagagcagcgtctccctcctgcagctgatcggggaccctcccccggctgagatc
accaaggtctatggccccgacaacagccccggctacgtgttcggtcccgatgctaacacg
ggccagctggcacgcgcccatcttcccagccccttttaccgggacttctccctcctcttt
aacctgaagccccagtccaccaatggtggcgttatcttctcggtcacggaccccttgcag
cagatcatgtatgtgggtgtcaagctgtcgcctgtgaaggcaaaccggcagaacgtaatc
ttctactatacggagcccgactcgcaggagtcgtacgtggcggccaccttccccgtgcac
aatctggctgaccagtggaaccgcttctccatctccgtgctggacgacaaggtcaccttc
tacatcaactgcgacgaccagccccaggtggtgcgctttgagaggtccccagacgagatg
gagttggagtctggagccggggtgtttgtgggccaagctggaggggccgatcctaataag
ttcctgggggtgatcggggagctgagggtcgttggagaccctcaggccgctgaaagacag
tgtgaagaggaaggggatgactcggatgcggcttcaggagacggcggaagcggtgacgaa
aggataccggacggggagaagaaaggatcgggtacatccatatgggacgcaaagatacga
aaatacgtgttggttgaaggtgtcaggctgacagttacgactactccaacgtcatcacgc
cccattcaacagcccccggtgacccggaaacaaccagaggtgtctcccacgaaagtgagg
gaccagggtggatctagaggcgagaagggcgacagaggagagaaaggagacagaggtcct
attggttcaaagggagattctggttccgagtcaggcacacgaggaggggcacgtggagag
aagggagtgcttggagaaaagggaatgaagggaaaagcaggctttggctaccccggctcg
aagggtgaccccggccctgctggtccccccggaccacccggcctcccagggccagcagca
gaggtggtatcacgtggcgacggctccgtggttcagacggtggcgggtccaagaggaccc
gctgggcctcctggtgcctccggccctgagggacccgcaggagctgacggagagcctggt
gatccaggtgaagatggatctcaaggccctgttggaccaccaggcttccctggaatccca
ggagaccccgggctcaaaggagagaagggtgaccgtggtgagggccagccaggccccagg
ggacctccagggccccccggacaaccagcgccaaccagacacgaccggccgacctttgca
gacatggagggctctgggttccctgacttggagacacttcggggactgcctggtttgcct
ggccctcctggcctccccggggccccaggtacctctgttgttgggacaggggtctctggc
ttatttggccccaaaggtcccccaggacaggatggtgctcctggtcaaccgggtttacac
ggcctgcctggtgctgatggtcgcccaggagctgcaggggccgggggagagaagggtgat
ccaggtgaactcggtcttccaggagcagtcggagcgaagggtgcacagggattgaatggc
attcccggtcaaccaggacagggtggattggctggcctccctggaccaatgggacctctg
ggacaacccgggccaccaggaccccccggaccaagctatcgtgttggttttgatgacatg
gaaggctctggtgtgggagtggccaatggggttcctggagccagagggccagaggggcaa
cagggtcctcctggcatccctggcctaccaggcaggtctggtttccctggtattcctggt
gagaagggaagtgaaggaccacagggaagcgatggccgaccagggttggatggtttccct
ggtcctaatggacaaaagggtgacagcggggacagaggagaaaggggagaatctggtcgc
gatggaaatggacagcctggaccaccaggcccacccggcccaccaggacaaatcatctac
cagacctccagcagttatgatggtgtcgttggaggcgccgggccccagggccaagctgga
ttccctggcccgattggaccaaaaggcgacatgggagatccaggccaacccagttatgga
gtcaagggcgagaagggcgagcctggctcaatcattgggcctgatgggaatactttgtac
ctgggaagattgtcgggtgagaagggcgacagaggacctgccggacctgtcgggccccct
gggcagtatggttctcctgggataaagggtgaatttggaatgcccggaagacctggtcgt
cctggtgtgaacggatacaagggtgaaaaaggagagccatccacaggagctggatttagc
tacccaggtgtcccaggcccacccgggccgcccggaccacccggaccagctgtgcccgta
gaccgcttcaatggttatgacgcctcaaggaattatccagtgacaaaaggggagaaaggt
gatttcggagctcaaggtctcccaggaacgccaggtgtggcctctaacttcgacattttt
acattcaagaatgacctgaaaggagagcacggcgatgcaggtgtgaagggggagaaagga
gagccaagtggtggctattatgacccccgttttggaagacaacaaggcccgccaggaccc
cctggaaacccaggacttatgggtccaaagggagattccatcacgggcccccctggtcct
cagggcccaccaggctccccagggattggctacgacggtcgtccaggaaacccaggccca
ccaggtcctcccgggcccacagggtcccactcactaccaggggcctacagacctacccac
cccattagtattcctggcccccccggacctgctggaccacctggaatacctggtcacacc
tcaggggtgacagttttgaggtcatacgacaccatgattgctactgcaaggcgccagtcg
gagggcacgctcatctacattgtcgacaaaacagatctctacatccgagtccgcaatgga
ttcagacaaatcatgctcagtgactacagtcccttctacagagatctggacaacgaagta
gcggcagtccagcctccccctgtcgtcaattacccccaatcccaggaccactcggccaac
aatggagctgaacaattctcccaaggcggcgctgccacccaccccatcgtgcctcctcct
cgccagcctattgagatatccaggcccgcccaacccaacaatcgcgaccccagagacccc
cctcagtatgatcacagatacccctctcagactgaccctaggtacccccctcagacagat
ggccgttacagccctgtgcagcctgagaacaggtatcccacccagccagaaagactatat
cacatcaccccccagagacaacctgttcctcctccagttccccaacctgccggtcacgtc
cacacatcagggccaggactccacctgatcgccctgaacactccccaagtaggcaacatt
cggggcattcgaggggcagacttcctgtgtttccagcaagctcgtgcagtgggcctgaag
ggcaccttcagggctttcttgtcctccaagctccaggacctctacagcatcgttcgcaag
tccgacagagacagcctccccatcttaaacctcaaggaccatgtgctatttaatagctgg
gagtcattgttcagtaagactgaggggaggatggaggaaaatgcaccaatctactccttt
gacggcagagatatcctcaaggacagtgcatggccagagaaaatggtctggcacggctct
accatcgagggtcaccgccagacagataactactgcgagacatggagggcaggagaccgt
gccgtgactggcctagcgtcttcactgcagaccggccagctcctacaacagttgcccagt
agctgctctagctcctacatagtgctgtgtatcgagaacagctatctctctcattccaaa
aagtaa
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