Oncorhynchus gorbuscha (pink salmon): 124043753
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Entry
124043753 CDS
T07892
Symbol
col6a3
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-3(VI) chain
KO
K06238
collagen type VI alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04518
Integrin signaling
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124043753 (col6a3)
04518 Integrin signaling
124043753 (col6a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124043753 (col6a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124043753 (col6a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124043753 (col6a3)
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124043753 (col6a3)
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124043753 (col6a3)
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124043753 (col6a3)
Hyaluronan
Extracellular matrix or blood plasma proteins
124043753 (col6a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
fn3
Motif
Other DBs
NCBI-GeneID:
124043753
NCBI-ProteinID:
XP_046218636
LinkDB
All DBs
Position
LG09:complement(53037279..53077631)
Genome browser
AA seq
2620 aa
AA seq
DB search
MRDFVQRVVETLGVDENKDRVAVVQYSRDPAAQFYLNTYTTKGEILNTVRGLRHKGGRPL
NTGAALQYVRDNVLTASSGSRRTEGVPQLLILLSGGRSFDNVDTPASALKELGVLIFGIG
TRSSDSRELQRISHDPSYALSVSDFTDLPNIQQQLLSSVESVVIDVTPESTTDLVDHDTS
RKDVVFLVDGSDGTRNGFPAMRDFVQRVVGKLNVGGDKDRVSVVQYGRDQEVHFYLNTYT
TKEDILNTVRSLRHRGGRPLNTGAALQYVRDNVLTASSGSRSQEGVPQMLILLSGGRSSD
NVDIPASALKDSGVLIFGIGTRNSSREVQGIATDPSFSQSVSEFTDLPSIQEQFFSTLIT
VQVEATPKTPTVIVDQSIARKDVVFLLDGSDGTRNGFPAMRDFVQRVVEKLTVEENRDRV
SVVQYSKESEAHFYLNTYTTKEDVVGTVRGLRHKGGRPLNTGAALQYVRDNVFIASSGSR
RLEGVPQILILLNGGRSFDNVDTPASALKELGVLVFGIGTRSSDSRELXKISYDPSYALS
VSEFTDLPNVQQQLLSAMGTVIVQVTTMTPTVKPTILVESQAPRRDVVFLLDGSDGTRSG
FPAMRDFVQRVVETLGVDENKDRVAVVQYSRDPAAQFYLNTYTTKGEILNTVRGLRHKGG
RPLNTGAALQYVRDNVLTASSGSRRTEGVPQLLILLSGGRSFDNVDTPASALKELGVLIF
GIGTRSSDSRELQRISHDPSYALSVSDFTDLPNIQQQLLSSVESVVIDVTPESTTDLVTT
TVVFTGGEKRDVVFLIDGTTAVRSEFPAIRDMIGRVVENLDVGLDRVRVSVVQYSDGATV
EFLLNEHSTKDEVRQATRKLQSSGGNRRNTGRALEWISKNIYQKSAGSRIEEGVPQFLIL
VTGGKSNDDVSGPVNQLKTNLVAPLAIGTKNADPNELRQIALKPELAYSINNFGQLPTVE
QQLIASVNTMTTTDISGSFVPSVLDIANLNMGRKDIIFLIDGSDTTGSNGIAHIRDFILN
IVQQLDVQLDQVRVAVVQYSDKVKTEFSLNSHNTKTAVLSAIKKLRQQGGRSSDLANAIE
YVTRNELKASAGVRLAQASQHLVVLTGRRSSTDVSVYGPLLKGSRVNCIGIGAGADYREL
NQIATSSADVLQVPAFPGLPVIKERFIARLNGTMPDEAPPDFVDPSLPKAKVADIVFLVD
GSINLGKDNFKEVMGFIQNLIDLFFTERDNLQIGLASYTTDVTDVFYLNTYKNKDDIIDA
ISRTEYKGGRRINTGTAIHHVQENHFIKDKGSRKDEGIAQILMIITGGRSASDSKTAALA
LKATGVRIYAVGVGDIEDELNNLASEASTVARASTFVELSELNEQILETLDDEVKGIKLC
TGVSQEPSKTCSLEVLVGFDVSSPNIFQAQRILESKMGAILQRITMMTGISCSSGQIPLI
QVGILAMDAASEPVHLEFTDNADMLFEAFRALRARGPYFLNAKTIAAYGSRFKSRAADAV
KVVIHLTDGLDGQYSEIKRQVEELKISGVNSFILVGLERVPRFEEAVLLEFGRGFRYTRP
LRVNVMDLDYELLEELDNIAERECCAVPCKCTGRRGDRGAVGLGGLKGGPGGAGGAGHPG
DEGGSGDRGPPGVNGTQGFQGCPGQRGIKGGRGYSGEKGEFGEIGLDGINGEEGKSGVAG
PPGDRGNPGRRGPKGTKGHAGDIGDTGIRGDPGTTGRDNNVAGPKGDPGDVGPVGEPGDD
GKMGGPGEPGRTGSDGRRGPAGQAGEPGKPGGNGVQGEPGIGGSRGQAGPIGARGTRGED
GNPGPRGPGGAQGPPGNNGRRGPLGRKGEPGEPGPKGIVGPLGPRGEPGEDGRDGFGIAG
PKGRKGDEGFPGFPGPKGAAGDGGTNGGPGPIGNRGQRGVSGEIGTPGQKGEVGYPGPYG
QKGPRGPGVVQCDLVKKIRDNCPCCYGQQECPLYPTELAFALDTSENVGRPAFNNMRDTV
LRLVGNITIAESNCPRGARVALTLYNNEVTTEIRFADGLKRRALVQRVEGLQALQTRKQR
SLETAMNFLAQNTFKRVRSGFLMRKVAIFFVNGPVKDQRAVSAAALRLYDSGIASVFLTN
KEDGQLTRALKMNSTGSALGQVIVLPNPGSAQYISAIQKVMNCHICLDSCAPDQMCDYAP
PQQSRDRRASTTDVDIDMAFVMDSSETTYPTVFTEMKRYVAHIVEQLEVSSDPVASIHHA
RVAVIQHAPYEFLRNSSGSPILVDVGLTDHRSAQDIRNFLLEKTPQLEGGRALAVAIEHT
VEQVFEKAPHQRDLKVLMLFVTGPVEQDEERLVAVATEAKCKGYFLVILGVGENLGAGDT
RVLTRMASEPSDVFFKRLTSTTHFYDMHIQNFGRLLPKYLSIENVFYMSPEVSKNCHWYQ
SDQSFPKFPFPKSHHSQEKHENHQAVHPRKHNDQDSDELHVANVTSSSLTLRWASPDPKY
MAYFKVVVTRLRDNTLVLRRNVTGTELTVGDLESAQTYHAVVTMHTAQGHVAATHKGIIT
TKAAAEHKVTAPMEVTGIMATTPLDKPEIAEPQQQVEQQPETEILPAIALPRGQKAWDWL
DESRANSGRRSQRRVRIKGKRRKGSLGAPVNQRVIAAIKT
NT seq
7863 nt
NT seq
+upstream
nt +downstream
nt
atgcgggactttgttcaaagagtagtggagacactcggtgtggatgagaacaaagatcgc
gtggctgtggtccagtacagtagagatccagccgcccaattctatctgaacacatacaca
acaaaaggagagattctcaacactgtaagaggtctgagacacaaaggtgggagacctctc
aacactggagcagctctccagtatgtgagagacaatgtcttgactgcctcctccggaagt
cgacgcactgaaggtgttccacagttactgattctgctgagtggtggaaggtcctttgac
aatgttgacactccagcttctgctctgaaggagcttggggtcttgatctttggaattgga
acaaggagctctgatagcagagaattgcagaggatatcacatgatcccagttacgctctg
tctgtctctgacttcactgaccttccaaacatccagcagcaacttctgtcctcggtggag
tcagttgttattgacgttacgccagaatcgacaacagatttagttgatcatgacacctcc
agaaaggatgtggtattccttgtggatggttctgatggcacaaggaatggattcccagca
atgcgtgattttgttcagcgagtagtggggaaactcaatgtgggaggagacaaagaccgc
gtttctgttgtccagtacggtagagatcaagaagttcatttctatctgaacacatacacc
acaaaggaggacattcttaacactgtgagaagtctgaggcacagaggaggtagacccctt
aacactggggcagccctccaatacgtaagggacaacgtccttactgcctcctctggaagc
agaagccaagagggcgtccctcagatgctgatactgctgagtgggggaaggtccagtgat
aatgttgacataccagcttctgccctgaaagacagtggggtcttgatctttggcattgga
accagaaattccagcagagaggttcaagggattgccactgatcctagtttttcccagtct
gtttctgaattcactgacctccccagcatccaggagcagtttttctccacactcataact
gtacaagttgaggccacacccaaaaccccaacagtcatagtggaccaaagcattgccaga
aaggatgtagtattcctgctggatggttctgatggcactaggaatggctttccagcaatg
cgtgactttgttcaaagagtggtagagaaactcactgtggaggagaacagagatcgagtc
tctgtggtccagtatagcaaagaatcagaggcccacttctatttgaacacttacacaaca
aaggaagacgttgtgggcaccgtaagaggcctgaggcacaaaggagggagacccctcaac
actggggcagctctccagtatgtcagggacaatgtctttattgcctcctccggaagtagg
cgccttgaaggtgttccacagattctgatactgctgaatggtggaaggtcctttgacaat
gtagatacaccagcgtctgctctcaaggagcttggtgtcttggtgtttggaattggaaca
aggagctctgatagcagagaattancaaaaatatcctatgaccccagttatgctctttcc
gtgtctgaatttactgacctccccaacgtccaacagcagcttctttctgctatgggcact
gtcattgtacaggtcacaaccatgacaccaacagtaaaaccaacaatcctagttgagagt
caggctcccaggagggatgtcgtgttcttgctggatggatctgatggcacgaggagtgga
ttcccagcaatgcgggactttgttcaaagagtagtggagacactcggtgtggatgagaac
aaagatcgcgtggctgtggtccagtacagtagagatccagccgcccaattctatctgaac
acatacacaacaaaaggagagattctcaacactgtaagaggtctgagacacaaaggtggg
agacctctcaacactggagcagctctccagtatgtgagagacaatgtcttgactgcctcc
tccggaagtcgacgcactgaaggtgttccacagttactgattctgctgagtggtggaagg
tcctttgacaatgttgacactccagcttctgctctgaaggagcttggggtcttgatcttt
ggaattggaacaaggagctctgatagcagagaattgcagaggatatcacatgatcccagt
tacgctctgtctgtctctgacttcactgaccttccaaacatccagcagcaacttctgtcc
tcggtggagtcagttgttattgacgttacgccagaatcgacaacagatttagtcaccaca
accgtagtattcactggcggagaaaagagggacgtggttttcctcattgacggcacaaca
gcagtgcgcagcgagttccccgccatccgtgacatgatcgggagggtcgtggaaaatctg
gacgtgggtctggatcgggtgagggtgtcagtggtgcagtacagcgacggtgccacggtg
gagttcctcttgaacgagcactccaccaaagacgaggtccgccaggccacgaggaagctt
cagagcagcggtgggaaccgtcggaacactggccgtgcccttgaatggatctccaagaac
atctaccagaaatcagcaggtagccgcattgaggagggagttcctcagttcctcattcta
gtcacagggggaaagtccaacgatgacgtctctggaccggttaatcagctgaagaccaac
ctggttgcccctttagccatcggcacaaagaatgccgaccccaatgaactgaggcagatc
gccctaaagccagaacttgcctactccattaacaacttcgggcagcttccaacagtggag
cagcagcttattgcttcagtcaacaccatgaccaccacagacatctccggcagttttgtt
ccctcagttttggatattgctaacctcaacatggggcggaaagatatcatctttctcatc
gatggctcggacaccacaggctccaatggcatcgcccacatccgtgacttcatcctcaac
atcgttcagcagctagatgtgcaacttgaccaggtccgggtcgctgtcgtccaatattcc
gacaaggtcaagacagagttctctctcaactcccacaacacaaaaacagctgtgctctca
gccatcaaaaaactacgccagcagggtggaagatcatccgatcttgccaacgccatcgag
tatgtgaccaggaatgagctgaaagcctcggcgggtgtccggcttgcgcaggcctcccag
catctagtggtccttaccggcagaaggtcctccactgacgtgtccgtgtacggccctctg
cttaaaggctcccgggttaactgcatcggcatcggggctggtgcagactacagggagctc
aaccagattgccaccagctctgccgatgttctccaggtacccgctttccccggcttgcct
gtcattaaggagaggtttattgccaggctgaacggaacaatgcctgatgaggcaccacca
gattttgtcgacccaagcctccctaaagccaaggttgctgatattgtattcttggtggac
ggctccatcaacctgggtaaggacaacttcaaggaggtgatggggttcatccagaacctc
atcgacctcttcttcactgagcgtgacaacctgcagattgggctggcgagctacaccacc
gacgtcaccgacgtgttctacctcaacacctacaagaacaaggacgacataattgatgcc
atcagccgcaccgagtacaagggaggccgcaggatcaatacaggtaccgccatccaccac
gtacaggagaaccacttcatcaaagataaaggcagcaggaaggatgagggaatcgcccag
atcctgatgatcatcaccggcggaaggtcggccagcgacagcaagaccgcagctctggcg
ttaaaggccaccggtgtgcgcatctacgctgtcggcgtgggtgacattgaggatgagttg
aacaacctggcgagtgaggcctccacagtggccagggcaagcacgtttgtggagctctct
gagctcaacgagcaaatccttgagacattggatgacgaggtgaagggaatcaagctctgc
actggcgtgagccaggagccctcaaaaacctgcagtctggaggtgttggtaggctttgat
gtgtcctcaccaaacatcttccaggcccagaggatcctggagtccaagatgggtgccatc
ctccaaaggatcaccatgatgaccggcatcagttgctcgtcgggccagatcccattgatc
caggtgggcatcctggccatggatgccgcctcagaacccgtccacctggagttcacggac
aacgccgacatgctgttcgaggcattccgagcactgcgcgcccgcggaccctacttcctc
aatgccaagaccattgccgcatatgggtccaggttcaaaagccgagcagcagatgcggtc
aaggttgtgatccatctgactgatggtctggatggccagtatagtgaaattaagagacag
gttgaagaacttaagatttcaggtgtgaacagctttatcctcgtgggtctggagcgggta
cccaggtttgaggaggccgtgctcctggagtttggccgcggcttcaggtacaccagaccc
ctcagagttaatgtcatggacttggactacgagcttctggaggaactggacaacattgct
gagagggagtgttgcgcggtgccatgcaaatgcaccggcagaaggggagacagaggagca
gtcggacttggaggactgaagggtggtccaggcggagcaggtggagcaggacatcccgga
gatgagggtggatccggagacagaggtcctcctggtgtcaacggaactcaaggtttccag
ggatgtcctggacagaggggcatcaagggtggtcgtgggtactctggagaaaagggtgaa
tttggagagattggcctggatggcatcaatggagaagagggcaagagtggagtcgctgga
cccccaggagacagaggaaaccctgggagaaggggacccaaaggaactaaaggacatgca
ggagacatcggggataccggaatccgaggagatcctggaaccacagggcgagataacaac
gtggctggacctaaaggagacccaggcgatgtcggcccagtgggagagccaggggacgat
ggtaagatgggaggccccggtgaaccaggcaggacgggttctgatggtcgaagaggccca
gccggacaagctggagaacctggcaaacccggaggtaacggtgtgcagggagagccaggt
atcggaggatccaggggccaagctggaccaattggtgcacgtggtaccagaggtgaggac
gggaaccctggaccaaggggcccaggaggagcccagggaccccccggaaacaatggcagg
agaggacctctcggtcgcaagggtgagccaggagagcccggacccaaaggcatcgtggga
cctctgggacctcgtggtgaacctggcgaagatggtcgagatggatttggaatcgcaggg
cccaaaggaagaaagggtgatgagggcttcccaggattcccaggaccaaagggagcggca
ggtgatggaggaaccaatggcggaccaggacccataggaaaccgtggccagaggggtgtt
tcaggagaaattggtactccaggacagaagggagaggttggatacccgggaccttatggc
cagaaaggaccgagaggacctggcgttgtgcaatgtgacttggtgaagaaaatcagagac
aactgtccttgctgctatggtcagcaggagtgcccactctaccctaccgagctggccttc
gcactggacacctccgaaaacgtgggtaggcctgccttcaacaacatgcgcgacaccgtg
ctccgcctggttggcaacatcaccattgccgagagcaactgccctcgcggcgcccgagtg
gccctcaccctctacaacaatgaagtgaccaccgaaatccgctttgcagacgggctgaag
cggcgtgcactggtgcagcgtgtggagggcctccaggcattacagacgcgcaaacagcgt
agcctggagacggccatgaacttcctggcgcagaacaccttcaagagggtgcgcagcggc
ttcctcatgaggaaggtggccatcttctttgttaatgggccagtgaaggatcagcgggcg
gtaagcgcagccgccctacgcctctatgactccggcatcgcatcagtgttcctgaccaat
aaagaggatggccagctcaccagagctctgaagatgaacagcactgggtcagcactgggt
caggtgattgtgctgcccaatcccggaagtgcacagtacatctcagctatccaaaaggtc
atgaactgccacatctgcctggactcctgcgccccggaccaaatgtgtgactatgccccc
cctcagcagtcaagagacaggagggcctccaccactgatgtggacattgacatggccttt
gtcatggatagctccgagaccacctaccccaccgtcttcactgagatgaaacgctacgtt
gcacacatcgtagagcagctggaggtctcgtcggaccctgtggcatccattcaccacgcc
cgcgtggctgtaatccagcatgctccctacgagttcctgcgcaacagcagcggctcaccc
atccttgtggatgtgggcctgactgaccaccgctcggcccaggacatccgcaatttccta
cttgagaagacgccccaactggagggtgggcgggccctggcagtggccatcgagcacacg
gtggagcaggtgtttgagaaagcaccccaccagcgagacctcaaggttctgatgttgttt
gtgaccggccctgtggagcaggatgaggagcggctggttgctgtggccaccgaggccaag
tgtaagggctatttcttggtcatcctgggtgtaggcgagaacctgggtgctggggacacc
cgcgtgctgacgcgcatggccagcgagccatccgatgtcttcttcaagaggctgaccagc
accacgcacttctacgacatgcacattcagaactttggccgactgctgcccaagtatctc
agcattgagaacgttttctacatgtcccctgaagtctccaaaaactgtcactggtaccag
agtgaccagtcattccccaagttccccttccccaagtcacaccacagccaagagaaacac
gaaaaccaccaggcagtccatccaagaaagcacaacgaccaagactcagacgagttgcac
gtagccaacgtcacttccagcagcctgactctgcgctgggccagcccggaccccaagtac
atggcctactttaaggtggtggtgacgcgcctgcgtgacaacacactggtgttgaggaga
aatgtgacgggcacggagctcactgttggcgacctggagagtgcccagacctaccacgcc
gtggtaaccatgcacaccgcccagggccacgttgcggccacccacaaaggcattattacc
accaaagcagcagcagagcataaggtcactgcccccatggaggtgacaggtatcatggcc
actacaccactggacaaaccagagattgcagagcctcagcaacaagtggagcagcagccc
gagacggagatccttccagctattgctctgcctcgaggccagaaggcatgggattggttg
gatgaaagccgtgcaaacagcgggcggcgctcacagcgacgagtgagaataaaaggaaag
agaagaaaaggctccctaggtgcacctgtcaaccaaagagtcattgccgcaataaaaacg
tag
DBGET
integrated database retrieval system
