Oncorhynchus gorbuscha (pink salmon): 124043771
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Entry
124043771 CDS
T07892
Name
(RefSeq) ATP-dependent RNA helicase DDX18-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124043771
03009 Ribosome biogenesis [BR:
ogo03009
]
124043771
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124043771
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124043771
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
90S particles
Helicases
124043771
Pre-60S particles
124043771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
BUD22
AAA_22
Motif
Other DBs
NCBI-GeneID:
124043771
NCBI-ProteinID:
XP_046218669
LinkDB
All DBs
Position
LG09:54687741..54700292
Genome browser
AA seq
687 aa
AA seq
DB search
MAALQMRLLRQKIQKRSEKNKERKLLNKQKQEEDNDDPNRLPEERCDETSHGATAISKPQ
NAKPRKKKQIQKNVSAEVNTEEKSVKMKRKLKTAESPGVKKAKKDEADDEEDMEEERGLT
VTEEDADQGTDKPTQPLEGAEAGEEEDDDDDDEEDEEGSEDEVEKGEGEKFGDDDEEGGP
ELPTGLTGAFEDTSFASLASLVSENTLKGVKEMGFDHMTEIQHKSIRPLLEGRDILAAAK
TGSGKTLAFLIPSIELIYKLKFMPRNGTGVVILSPTRELAMQTYGVMKELMTHHVHTFGL
IMGGSNRTAEAQRLANGVNILVATPGRLLDHLQNTAGFMYKNLQCLIIDEADRILEVGFE
EELKQIIKLLPKRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDNATVDGLEQGY
VVCPSEKRFMLLFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKR
TTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGIG
HALLILRPEELGFLRFLKQAKVPLSEFEFSWAKISDIQGQLGKLIEKNYYLHKSAQEAYK
SYVRAYDSHSLKAIYSVNTLNLPMVALSFGFKVPPYVDLNVHSKGGLKMTKRGGGGGFGY
QKGKGAHKAKIFKHVNKGKGDKRQFSR
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcttcagatgaggcttcttcggcagaaaatccagaaaagaagcgaaaagaac
aaagagcgaaagctacttaataaacagaaacaagaggaagataatgatgacccaaacaga
cttccagaggagcgttgtgatgaaacgagtcacggggccacagcaatttcaaagccacag
aatgccaaacccaggaagaagaaacaaatacagaagaatgtgtctgcagaggtgaacaca
gaagaaaaatctgtcaagatgaaaaggaagctcaaaactgctgaatcgccaggtgtgaaa
aaagccaagaaggatgaggcagatgatgaggaggatatggaggaggagagggggttgact
gtgactgaggaggatgctgatcagggcacagacaaacccacacagcctcttgaaggggca
gaggctggagaggaggaagatgatgatgacgacgacgaggaggatgaagagggaagtgaa
gatgaggtggaaaagggggaaggagagaagtttggggatgatgatgaggaaggtggacca
gagctcccaactggcttgacaggtgcgtttgaggacacatcgtttgcctctttagcctct
ctggtgagcgagaacactctaaagggtgtgaaggagatgggctttgaccacatgactgag
atccaacacaaaagcatccgccccctactggagggaagagatatcctggctgctgctaag
accggcagtggtaaaaccctggccttcctcatcccctccatcgagctcatctacaaactc
aagttcatgcccaggaacggcacgggcgtggtgatcctgtccccaacgcgcgagttggcc
atgcagacgtatggcgtgatgaaagagctgatgacccaccacgtgcacacctttggcctg
atcatgggcggcagcaaccgcacggccgaggcccaaaggctggccaacggtgtcaacatc
ctggtggccacacccggcaggctgctggaccacctgcagaataccgctggcttcatgtat
aagaacctccagtgtctgatcattgacgaagccgaccgtatcctggaggtcggcttcgag
gaggaactgaagcagatcatcaaactcctaccaaagcggaggcagaccatgctgttctct
gccacgcagacccgtaaggtggaggacctggcccgtatctccctgaagaaggagcccctc
tacgtgggcgtggacgacaacaaggacaacgccaccgtggatggccttgaacagggctat
gtggtgtgtccgtctgagaagcgcttcatgctactcttcaccttcttgaagaagaaccgt
aagaagaagctgatggtgttcttctcctcctgcatgtcggtcaagttccactacgagctg
ctcaactacatcgacctgcccgtcatggccatccacgggaagcaaaagcagacgaagcgt
accaccaccttcttccagttctgtaacgctgactctggcatcctgttgtgtaccgacgtg
gcggccagaggcctggacatccccgaggtggactggatcgtacagtatgaccccccagat
gaccccaaggaatacatccacagggtcggcagaacagctcgcgggatcaacggcataggc
cacgccctcctgatcctacggccagaggagttgggcttcctgcgcttcctcaaacaggcc
aaggttcctttgagtgagtttgaattctcttgggcgaagatctccgatatccagggtcag
ctggggaaattgattgagaagaactactacctgcacaagtcagcccaggaggcctacaag
tcctacgtgcgggcgtacgactctcattcgctcaaagcgatctacagcgtcaacacgctc
aacctccccatggtggcgctctccttcggcttcaaagtgcccccctacgtcgacctcaac
gtccacagcaaaggaggactgaagatgacgaagaggggtgggggcggcggcttcggctac
cagaagggcaagggcgctcacaaagccaagatcttcaagcacgtcaacaaaggcaagggg
gacaagaggcaattctctcgctag
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