Oncorhynchus gorbuscha (pink salmon): 124044222
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Entry
124044222 CDS
T07892
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ogo01002
]
124044222
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
124044222
Enzymes [BR:
ogo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
124044222
Peptidases and inhibitors [BR:
ogo01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
124044222
Ubiquitin system [BR:
ogo04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
124044222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
DUF2014
Motif
Other DBs
NCBI-GeneID:
124044222
NCBI-ProteinID:
XP_046219745
LinkDB
All DBs
Position
LG09:86424433..86500504
Genome browser
AA seq
2638 aa
AA seq
DB search
MTATTRGSPVGGNDSQSGQGQAPDAQSQPPLPQNQTLSPNSSNENSPVSPLDEQGQGDGP
PQLEEEVEEPAFPHTDLTKLDDMINRPRWVVPVLPKGELEVLLEAAIELSKKELDVKCEA
CQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLA
MAFNPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKGWLVDLINKFGTLNGFQ
TLHDRFISGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELK
KEAKNEAKNDALSMIIKSLKNLASKVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNAL
NEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEK
ILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKAS
WTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKI
LDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLRKKMPINI
QTNLVGQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKAEQAEFDPQT
VRVGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWY
SKLMGDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAY
MMDDLELIGLDYLWRVVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFD
RLKASYDTLCVLEGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAF
RGKHITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRGILTRIKANATHTKIELFIGGDVV
DPADDRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHFSEGPNPE
VESCLPGVIMSLHLRYVSFLWQVADLGCSPNMPLLRDGARVLMKLMPPDNSTVENLRGVC
LDHAKLGENGLSPTLDSRFFGPSPSQVLYLIEVVYALLMPASSTLGEDASDFQYNFLKSG
GLPLVLSMLTRNNFLPSADMETRRGAYLNALKIGKLLLTAVGFGHVKAVAEACQPNAEGT
TPVSPINQATHDQALVLQSALQNLPNPASECMLRNVAIRLAQQISDENFFQASKYIPEIC
VIRAVQKIAWASGCGTIQLVFSSNEEISKIYEKTDVVKEPDGEDEQVCCEALEVMTLCFA
LLPTALDTLSKEKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLL
FTVLGSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKKIRDEVKRT
GETGVEETILEGHIGITKELLAFQTPEKKYYIGCENGGANLIKELMDDFIFPASNVYLQY
MKSGEFPTEQAIPVCSSPASINAGFELLVALSVSCVRNLKQIVNMLTDMYYLGCEALTEW
EYLPPVGPRPTKGFVGLKNAGATCYMNSVIQQLYMIPPIRDGILAIEGTGTDVDDDMSGD
EKQESESNADPRDEVFSYNHQFDDKPSLSKSEDRKEYNIGVLRHLQVIFGHLASSRLQYY
VPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQK
ICQGCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVK
RLLIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNP
ENQVIQQNEPSDPEPPGSSKYRLVGVLVHSGQASGGHYYSYITQRNVGVADGERNRWYKF
DDGDVTECKMDDEEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLD
KDSELVKYIQELTISSSSNNKPSHQVKMPNVIECSVRKQNVQFMHNRMQYSLEYFQFVKK
LLTCNSVYLNPPPGQDHLLPDAEEMAMISVQLAARFLFSTGFHTKKVVRGAASDWYDALC
VLLRHSKNVRYWFAQNILFAYANRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPP
PTASPASASTQSQACDNLRLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAE
KTQLLKLSVPATFMLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVAARMQSSINGN
PPLPNPYGDANQTTPVMPVQQLVGEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWENPQ
FSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDT
IQRSKNHYQKRAYQCIKCMVALFSSCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYT
GNPQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEECHLTKPGEAMSEEEA
AMRKSSSPQQLLPGDGTGPQQHTEPDDQEASEDQDTSPPEDTSLYPHSSPGTTTQFQQNN
HPHGQPYTGPAAQLMNNPQHPGPAPSTPGPDPGPRAQENWESTEEVPSTSTAPTSPKE
NT seq
7917 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaccacgcgtggctctccggtggggggcaacgacagccagtcgggccagggc
caggcacccgatgcccagagtcagcccccgctgccacagaaccagacgttgtctcctaac
tcgtccaatgagaactctccagtgagccccctggatgagcagggtcagggggatggaccc
ccacagctggaggaggaggtggaggagccagccttccctcacacagacctgacaaagctg
gatgacatgatcaacagaccccgctgggtggttccagttctgccaaagggagagttggag
gttcttctagaagctgctatagagcttagtaaaaaggaacttgatgtgaagtgtgaggca
tgccagaggtttttcagggacggcctgaccatctctttcaccaagattctcacagacgag
gccgtcagcgggtggaagttcgagatacataggtgtatcatcaacaacacccaccggctg
gtggagctgtgtgtggccaagctctctcaggactggttccccttgctggagctgctggcc
atggccttcaacccccactgcaagtttcacatctacaatggcacgaggccctctgagacg
gtgcccgccggggcgcagctggcagacgacgagctctttgcccgcccccctgaccctcgc
tctccaaagggctggttggtggatttaattaacaaattcggcacgttaaacgggtttcaa
acgctgcacgatcgcttcataagtggccaagcactgaacgtccagatcatcgctgccctt
atcaagcctttcgggcagtgttacgagtttctcacgttgcacacggtgaagaagtacttc
ctgcccgtcatcgagatggttcctcagttcctggagaatctgacagacgaggagctgaag
aaggaagccaagaacgaagccaaaaatgatgccctgtccatgatcatcaagtccctgaag
aacctggcctccaaggtgcctgggcaggaggagaccgtcaagaacttagagatttttagg
ttaaaaatgattcttaggttattgcaaatttcctcttttaatggcaaaatgaatgcacta
aacgaagtaaacaaagtaatctccagtgtgtcctattacacacatcggcatggcaacccc
gaggaggaggagtggctaactgcagaacgtatggcggagtggatccagcagaaccacatc
ctgtccattgtgctgagggacagcctccaccagcctcagtatgtagagaaactagagaag
atactgcgcttcgtcatcaaggagaaagctcttaccatgcaggacctggacaacatctgg
gctgcacaggctggtaaacatgaggccattgtgaagaacgtacacgacctattggccaag
ctggcctgggacttctctcctgagcagctagaccacctctttgactgcttcaaggcgagt
tggacgaacgccagtaagaagcaacgtgagaagctgttggaactgatccgtcgcctggcg
gaggacgacaaggatggcgtgatggcccacaaggtgctgaacctgttgtggaacctggct
cacagcgatgatgtgcctgtagacatcatggaccaggcactcagtgctcacataaagata
ctggactacagttgctctcaggatagagacacgcagaagatccagtggatcgatcgcttc
atagaagagttgcgcaccaatgacaaatgggtgattcctgcactaaagcagatccgagag
atctgtagcctgttcggagaggctcctcagaatctcagaaagaaaatgcctattaacata
caaacgaacttagtgggtcagacccagaggagtcctcatgtgttctatcgtcatgacctg
attaaccagctgcaacacaaccatgccctggtcacgctggtggctgagaacctctctgcc
tacatggagaccatgaggcagttctctaaagccgagcaggcggagtttgacccccagacg
gtgagggtagggagccgctacagccacgtacaggaagtccaggagagactcaacttcctg
aggttcctgctgaaggatggccagttgtggctctgtgctcctcaggccaaacagatctgg
aagtgcctggctgagaacgcagtctttctttgtgaccgagaggcctgcttcaaatggtac
tccaagctgatgggagatgagccagacctggacccggacatcaacaaggacttctttgag
aacaacgttctgcagctggacccgtctctgctcacggagaacggcatgaagtgctttgag
aggttcttcaaagccgtcaactgcagggaaggcaagctggtggccaaacgtagggcctac
atgatggacgacctggaactcataggcctggactacctctggagggtcgtaattcaaggg
agtgatgacatcgccagtcgagccatagaccttctaaaagagatctacaccaaccttgga
ccaaaactacaagtcaatcaggtagagatccacgaggatttcatccagtcatgtttcgac
cgtctgaaggcgtcgtacgatacgctctgtgttctggaaggggacaaggacagcatcaac
tgtgcccggcaggaggccatccgcatggtccgcgtgctcactgtgctcaaggagtacatc
aacgagtgtgacagtgactaccacgaggagaggaccatactgcccatgtccagggcgttt
cgggggaagcacatcacgttgatcgtgcgtttccctaaccagggccgtcaggtggatgac
ctggacatctggtctcacaccaacgacaccattgggtcagtgcgccgcggtatcctcaca
cgcatcaaggccaacgccacgcacaccaagatagagctcttcattggcggggatgttgtt
gacccagccgacgacaggaagctgattggccagctcaacctgaaagacaaaacgttgatc
acagccaagctgacccaggtgagtgccaacatgccctccagcccagacagctcctcggac
tcttccactggctcaccgggtaaccatggcaaccacttcagcgaagggcccaaccccgag
gtggagagctgtctccctggagtgatcatgtctctccacctgcgctacgtctccttcctg
tggcaggtagcagacctgggctgtagccccaacatgcctctgctacgagacggagccaga
gtactgatgaagctgatgcctccagataacagtaccgtggagaacctgcggggtgtatgt
ctggaccatgccaagctgggagagaatggcctcagcccaacactggactcacgcttcttt
ggcccatcgccatcacaagtcctctacctcatagaggtggtgtatgccctgctcatgcca
gccagctccacattgggtgaggacgccagtgacttccagtacaacttcctgaagagtggc
gggctaccgctggtactgagcatgctcacgcggaacaacttcctgccgtcggccgacatg
gagacgcggcgaggggcatacctcaacgctcttaagatcggcaaactgctgctcaccgct
gttgggttcggacacgtcaaagctgtggccgaggcttgccagcccaacgctgaggggacc
acacccgtctcaccgattaaccaggccactcacgaccaggctttggtcctccagagtgcc
ctgcagaacctccccaaccctgcctctgagtgcatgctccgcaatgtagctatacgcctg
gcccaacagatctctgacgagaacttcttccaggcgtcgaagtacatccctgagatctgt
gtgatccgggcggtgcagaagatagcatgggcttcaggctgtggcaccatacagttggtc
ttcagctccaatgaagagatcagcaaaatctatgagaagacggacgtggttaaggagccg
gacggggaggatgagcaggtgtgctgtgaggccctggaggtcatgaccctgtgtttcgcc
ctgctgcccaccgctctggacacactcagtaaggagaaggcctggcagaccttcatcata
gacctgctactgcactgccacagcaagtcagttcgtcagatggcccaggagcagttcttc
cttatggccaccaggtgctgcatgggccaccgacccctcctcttcttcatcaccctcctc
ttcactgtgctggggagcacagctaaagagcgggccaagcatgctggggactacttcacc
ctgctcaggcacctcctgaactacgcctacaacagcaacatcaacctgcccaacgcagag
gtgttgctcaacaacgagatcgactggctgaagaagatcagggatgaggtgaagaggaca
ggggagacgggcgttgaggagaccatcctggagggacacatcggaattaccaaggagttg
ctggccttccagacaccagagaagaagtactacatcggctgtgagaatggaggggccaac
ctcatcaaggagttgatggacgacttcatcttcccagcgtctaacgtgtacctgcagtac
atgaagagtggggagttccctacggagcaggccatccctgtctgtagcagccccgcctcc
atcaacgcaggtttcgagctgctggtggctctgtcagtgagctgtgtccggaacctcaag
cagatcgtcaacatgctcactgacatgtactacctaggttgtgaggctctgacagagtgg
gagtatctccctccggtggggccgcggcccactaaaggctttgtggggctgaagaacgct
ggggccacctgctacatgaactcagtcatccagcaactttacatgatccctcccatccgc
gacggaatcctggccatcgagggcaccggcaccgacgtggacgatgacatgtccggcgac
gagaagcaggagagcgagagtaacgcagacccgcgggatgaggtgtttagctataaccac
cagtttgacgacaagccgtcgctcagtaagtcggaggacaggaaggagtacaacattggg
gtgctgcgccacctacaggtcatctttggtcacctggcctcctccagactgcagtactac
gtaccccggggcttctggaaacagttcaggttatggggtgagccggtgaacctgcgagag
cagcacgatgccctggagttcttcaactccctagtggacagtctggacgaggctctgaag
gccctgggtcacccggccatgcttagcaaggtgctggggggatccttcgccgaccagaag
atctgccaggggtgcccacatagatatgagtgtgaggagtcgttcaccactctgaatgta
gacatcaggaaccaccagaacctgttggactctatggagcagtatgtcaagggagacttg
ctggagggagccaacgcataccactgtgagaagtgcaacaagaaggtggacacagtgaag
cgtctgctgatcaagaagcttcctccagtgctggccatccagctgaagaggtttgactac
gactgggagagggagtgtgccataaagttcaacgactactttgagttccccagggagctg
gacatggagccctacactgtagccggggtggccaagctggagggggacgacgtcaaccca
gagaaccaggtgatccagcagaacgagccctctgatccagagcccccgggcagctccaag
taccgcctggtgggggtgctggtccactcaggccaggccagcggcggacactactactcc
tacatcacgcagaggaacgtgggcgtggccgacggcgagcggaaccgctggtacaagttt
gacgacggcgacgttactgagtgcaagatggacgacgaggaggagatgaagaaccagtgc
ttcggaggggagtacatgggcgaggtgtttgaccacatgatgaagagaatgtcctaccgg
cgccagaaacgctggtggaatgcctacatcctcttctacgaacgcatggactcattggac
aaggacagtgagctggtcaagtacattcaggagctgaccatctcgtcctcgtccaacaac
aagccgtcgcaccaggtcaagatgcccaacgtgattgagtgcagcgtgcgcaagcagaac
gtgcagttcatgcacaaccgtatgcaatacagcctggagtatttccagtttgttaagaaa
cttctgacctgtaacagtgtctatttaaaccctccgccaggacaagaccatctactgccc
gatgcagaggagatggctatgattagtgttcagctggctgctaggttcctcttcagcact
ggtttccacaccaagaaagtagtgaggggggccgccagtgactggtatgatgcgctgtgc
gtcctgctgagacacagtaagaatgtacgctactggtttgcacaaaacatcctgtttgcc
tacgccaaccgcttctccgagtacctgctggagtgccccagcgctgaggtccggggcgcg
ttcgccaaactcatcgtcttcatcgcacacttctcccttcaagacggaccctgccccccg
cccacagcatcccctgccagcgcctccacccaatcacaggcgtgtgataacctgcgtctc
agtgaccacctgttgagggctgtgttgaacctcctcaggagagaggtgtcagagcatggc
cgacacctgcagcagtacttcaacctcttcgtcatgtatgccaacctagggctggcagag
aagactcagttgttgaagctgagtgtcccagctaccttcatgctggtggctctagacgag
ggacccggtcctcccatcaagtaccagtatgcagagctggggaaactctacaccgtggtc
tcccagctggtgcgctgctgtgatgtggccgcacgcatgcagtcatccatcaatggtaac
ccccctctccctaacccgtacggcgatgccaaccagaccaccccggtgatgcctgtgcag
cagctggtgggagagatcctttttgttaggaccagctacgtgaagaagatcatcgaggac
tgcagcaactcagaggagacagtcaagctgctgcgcttcagctgctgggaaaatccccag
ttctcctctactgtgctatcagagctgctctggcaggtggcgtactcctacacctacgag
ctgaggccttacctggacctgctgctgcagatcctgctcatcgaggactcctggcagaca
cacaggattcacaacgtgttgaagggtataccagacgacagggacggcctgtttgacacc
attcagcgctccaagaaccactaccagaaacgggcctaccagtgtatcaagtgcatggtg
gccctgttcagcagctgctctgtggcctaccagatcctacagagtaacggggacctgaag
cgtaagtggacctgggcggtggagtggctgggggatgagctggagaggagaccctacaca
gggaacccccagtacacctacaacaactggtctccacccgtccagagcaacgagacctcc
aacgggtacttcctggagcgctcgcactctgcacgtatgaccctggccaaggcctgcgaa
ctttgccccgaggagtgtcatttaacgaagcccggtgaggccatgtctgaagaagaagct
gccatgcggaaatcgtcctcgccacagcagcttttgccaggggacgggacaggaccacag
caacacactgagcccgatgaccaggaagcctctgaagatcaggacacctctcctccagag
gacacctccctctacccacactcatctcctgggacgaccacacagtttcagcagaacaac
catccccacggacagccatacacaggccccgctgcccagctcatgaacaaccctcagcac
cctggccctgccccttctaccccaggccctgaccccggcccaagagcacaagagaactgg
gagagcactgaggaggtcccctccacatccacggcccctacctcacctaaggagtaa
DBGET
integrated database retrieval system
