Oncorhynchus gorbuscha (pink salmon): 124045179
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Entry
124045179 CDS
T07892
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124045179
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124045179
09142 Cell motility
04820 Cytoskeleton in muscle cells
124045179
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124045179
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124045179
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124045179
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124045179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
124045179
NCBI-ProteinID:
XP_046220390
LinkDB
All DBs
Position
LG01:89631004..89689599
Genome browser
AA seq
1644 aa
AA seq
DB search
MMVHSGTLVLLVAVSYTIFRTEAKGCSGSSCGGKCDCSGVKGEKGERGFPGLQGNMGFPG
MQGNEGPAGPMGPKGEYGESGTPGMKGTRGSNGLSGFPGNPGLPGIPGQDGPPGSSGIPG
CNGTKGDRGTDGQPGFPGLQGPPGIPGLMGMKGDPGGVLGIIPLKGDKGFPGTPGLPGPN
GPSGPEGPPGNQGSDGPRGFPGIPGPPGEKGDRLSFQSEKGDKGAQGLRGPPGPPGLPSQ
EAGGNTVTHFLPGPPGQRGETGDRGDKGSCIPHLNGVKGEQGPPGPRGKPGKDGDNGFKG
ERGFPGGPGYHGTPGEKGEKGPPAYVDSAPGSPGPPGLPGLQGERGFPGLQGDLGPPGSL
IEGPPGEKGIPGEIGQKGDRGADGDSLTGKPGQDGSVGPPGPPGPPGDEPCDPALEKGPP
GPPGPPGLQGELGQKGDQGDTCVQCEAFGPPGLPGPQGPKGLQGYPGAAGTKGDTGLPGP
TGPDGSPGNYGTPGLIGAPGAHGEPGDIYVASGLKGDKGGSGFVGTRGLPGVDGLPGKAG
LPGLPGPKGEPAQDGIKGDRGLDGEPGITGPPGERGPPGVPGFGRQGEPGEKGTSGQGGR
PGIPGQPGVKGEPGKGVSSPGPQGTPGPRGESGIRGLQGDRGPHGDPGIPGFPGQKGDTG
APGMGFSGPPGPKGYSGAPGATGLPGEPGRPGQDGFSGISGTPGPKGEPGRGLPGPKGAQ
GPAGVTGFPGEKGNLGLPGIPGQEGHTGPPGAQGIKGDHGPPGQHGGTGPPGPPGAGEPG
APGPMGPPGESGLFGHDGVKGDKGLPGSPGLDMPGPQGDKGDSGLPGLSGSKGFPGRPGP
AGRDGFPGGEGPKGEMGVMGTPGTPGYQGPSGNPGSPGLRGDPGISGPRGEFGENGPKGE
RGEPGLQGPAGNMTDVDMEHMKGEKGDLGDPGDPGYTGEKGYPGQPGVPGMPGKDGEPGT
PGQPGDKGETGFPGEPGSIGYPGNKGGIGEMGYPGSLGTKGDKGIVGTPGHPGFRGTEGV
KGDKGQTGLPGVGVPGPSGEKGQLGLPGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGHI
GYQGQPGQPGEKGIGGLPGSPGEPGQTGRPGEPGLQGPPGTTGDKGASGVDGIPGSSGER
GDTGLPGRGFSGTPGSSGDKGDKGSPGFPGSPGIPGIPGTRGDKGIPGFEGSHGQPGERG
LPGPAMEGPKGDQGVSGKPGEPGTSGAPGPAGVPGSVGGKGDKGDQGEPGVHGEQGFKGD
QGYPGLSGQAGLPGVDGLKGEIGLQGVPGFPGTKGEFGVVGFKGELGDRGFPGDKGNDGP
PGPPGPHIFIKGDSGFPGNQGPQGPVGPSGIPGLKGQQGVTGIQGIKGDEGNPGFNGLPG
AKGEPGLLGPSGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQSVEVPHCPEGTS
VIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTS
PEPMPMNMAPITGQSIKPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRGAPFIECHGRGTCNYYANSYSFWLATIEDEDMFTKP
VPTTQKAGNLRSNISRCQVCMKRT
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccatagtggtacgctggttctgttggtggctgtatcctacactatatttcgg
acagaggctaaggggtgttctgggtcatcgtgcggtggaaaatgtgactgcagtggagta
aaaggagaaaagggtgagcgggggtttcctggtctccaaggcaacatggggttcccgggc
atgcagggcaacgaggggcccgccgggccgatgggccctaagggagaatatggcgagtct
ggaactcctggaatgaaaggaacacgtggatctaatggtttgtcaggcttcccaggaaat
ccagggctaccgggtatccccggacaagacggcccccctggatcgtcaggtatcccaggg
tgcaacggaacaaagggagatcgagggacagatggacagcctgggttccctggtctacag
ggtcctcctggtatccctgggctaatgggaatgaaaggagacccaggtggtgttttagga
atcatcccactgaaaggagataaaggattccctggaacacctggtttaccgggacctaat
ggcccctcaggacccgaaggccccccaggaaaccagggatcagacggacccagaggtttc
cctggcatacctggccccccaggagaaaagggtgaccggctgtcattccagagtgagaag
ggagacaagggtgcacaagggctccgtggtccccctggcccccctggactcccgtcacag
gaagcaggaggaaataccgttactcatttcctccctggaccaccgggtcagagaggcgag
acaggagacagaggagacaaaggttcttgcattccccatctaaacggggtcaagggtgaa
caaggcccaccaggaccaaggggaaaacctggcaaagatggcgacaatggatttaaggga
gagagaggctttcctggcggccctggataccatggaacaccgggtgaaaaaggagagaaa
ggacctccagcatatgttgatagtgctcctggctctcccggcccccctggtctcccgggc
ttacaaggagaaagaggtttccctggtcttcaaggagaccttggtccaccaggcagtctt
attgaaggacctcccggagagaagggcataccaggagagattggtcagaagggagacagg
ggtgcagatggggactctctcacaggaaagcctggacaagatggatccgtcggaccccct
ggtcctcccggacctcctggtgatgagccatgtgatccagcccttgagaagggaccaccc
ggaccccccggcccaccaggactacagggggagttgggacagaaaggtgatcagggagac
acgtgtgtgcagtgtgaagccttcgggccccctggactccctggtccacaggggcctaaa
ggactgcaaggatatcctggagcagcaggcactaaaggagacacgggcctgcctggacct
actgggcctgatggaagccccggtaattacggtactcctgggttgatcggggctccagga
gcccatggtgagcctggcgatatctacgtggcttcagggctgaagggtgacaaaggaggg
tctggcttcgtgggcacacgaggactgccaggcgtggatggactgccagggaaagctgga
ctaccaggcctgcccggacccaaaggagaacctgcccaagatggcatcaagggggaccgt
ggtctggatggggaacctgggatcactggacccccaggagagaggggtcctcctggtgta
ccagggtttggccgacagggggagcctggagagaagggtacatctggccaaggaggccga
cctggaatccctggacaaccaggagtgaaaggtgaaccaggaaaaggtgtgagttcacct
ggaccccagggcacccctggacctcgaggagaatctggcatacgtggactacaaggtgac
cgaggacctcatggagacccaggaattccaggattcccaggacagaaaggtgacacaggt
gcacctggcatgggattctcaggaccacctggacccaaaggatattctggagctccagga
gccactgggttgccaggagagcctggaagacctggacaggatggtttctctggaatatca
ggcacacctggtccaaagggtgagccaggtaggggtctacctggacctaaaggtgctcag
ggtcctgccggagtgacaggtttccctggagagaaaggcaaccttggtctacctggtatt
cccggacaagagggacacacaggaccacctggagctcagggcatcaaaggtgaccacggc
ccccctggtcagcatggtggcacagggccccctggaccccctggagcaggagaacctggt
gcccctggacccatgggaccccctggagagtcaggcctcttcggtcatgatggtgtgaag
ggtgataagggtttgcctggctctcctggtctggacatgcccggccctcagggagataag
ggagactcaggattacctggactttctggttccaaagggtttccaggacgaccaggcccc
gctggcagagatggattccctgggggggaaggccccaagggagagatgggagtcatggga
acacctggaacaccaggatatcagggtccttctgggaaccctggaagtccaggactgaga
ggtgaccctggtatctctgggccaaggggggagttcggtgaaaatggacccaaaggagag
aggggagagccaggtctccagggccctgctggcaacatgactgatgttgacatggagcac
atgaagggcgagaaaggagaccttggggatccaggtgaccctggatacacgggagagaag
ggttatccaggacagcctggagtacctggtatgccaggaaaggatggagagcccggtaca
cctggtcagccaggtgataaaggggagacaggttttcctggagagcccggcagtattgga
tatcctggaaataaaggaggcattggcgaaatgggatatccaggttctctaggtacgaag
ggtgataaaggcattgtgggcacaccgggtcatccagggttcaggggtacagagggggtg
aagggagacaagggacaaaccggtctgccaggtgttggagtaccaggaccctctggagag
aagggtcagttgggtctgcctgggttccctggtaacgcaggagagaagggtcagaaggga
ggaatgggagtgcccgggatgccaggaacaccaggaaccaagggagacactggacacatt
ggttaccaaggtcagccgggtcagccaggagagaagggtattggtgggcttcccgggtca
ccaggagagccaggtcaaacaggtcgaccaggtgagcctggtctgcagggtccaccaggt
acaaccggagacaaaggagcgtcaggagtggacggcatacctggatcatcaggagagaga
ggagacacaggtttacccggcaggggcttctcagggacaccagggtcgtctggggataaa
ggtgacaaaggctctccaggtttcccaggctctccaggtatcccgggtatcccagggacc
aggggagacaagggtattccaggatttgagggttcccatggccagccaggagaacggggt
ctcccaggacccgccatggaggggcccaaaggagaccaaggagtgtcgggaaagcctgga
gaaccaggtaccagtggtgctccagggcctgctggtgttccaggcagcgtgggggggaag
ggagacaaaggggaccagggtgaaccaggagtacatggggagcagggtttcaaaggagat
caaggataccctggactttctggtcaagctggccttccgggtgttgatggactgaaggga
gagataggactgcagggagtgcctggtttcccagggacaaagggtgaattcggagtggtt
ggattcaaaggagagctgggggacagaggattcccaggagacaaaggtaatgatggtccc
cctggtcctcctggcccccacatcttcatcaagggagacagcggcttccctggtaatcag
ggccctcaggggcctgtggggccctcgggtatccctgggctgaaaggacagcaaggtgtg
acaggtattcagggtattaaaggtgatgaggggaacccagggtttaatggtctccccggc
gccaagggagaaccaggcttgcttggtccctcaggacccagagggtaccctggaccccca
ggacctgatggtgttccgggtcaggtgggtcctcctggcccctcctccatggaacatggt
ttcctggtaaccaggcacagccaatcggtggaggttccacattgtcctgagggaacgtca
gtgatctatgatggatattccctactctacgtccagggcaacgagcgctcccacggccag
gacctgggtacggctggtagctgtctaaggaagttcagtcccatgcccttcctcttctgt
aacatcaacaacgtctgtaactttgcctcccgtaacgactactcctattggctcacctcc
cctgagcccatgccaatgaacatggcccctatcactggccagagcatcaagcccttcatt
agcaggtgttcagtgtgtgaggctcctgccatggtgatagcagtgcacagtcagaacatc
atgatcccatcatgccccaatggctgggactcactctggattggctactctttcgtcatg
cacactagtgcaggtgctgagggctctggacaggcactggcatctcctggctcctgtcta
gaggagttccgtggcgctccgttcatcgagtgtcacggccgtggaacctgcaactactat
gccaactcctacagcttctggctggccaccatcgaggacgaggatatgtttacgaaacct
gtgcccaccacacaaaaggcaggaaatctccggagtaacattagccgttgccaggtgtgc
atgaagaggacatag
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