KEGG   Oncorhynchus gorbuscha (pink salmon): 124045947
Entry
124045947         CDS       T07892                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ogo01009]
    124045947 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ogo03036]
    124045947 (kdm5bb)
Enzymes [BR:ogo01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     124045947 (kdm5bb)
Protein phosphatases and associated proteins [BR:ogo01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     124045947 (kdm5bb)
Chromosome and associated proteins [BR:ogo03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    124045947 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_2 PHD-1st_NSD
Other DBs
NCBI-GeneID: 124045947
NCBI-ProteinID: XP_046221743
LinkDB
Position
LG10:complement(34585715..34622832)
AA seq 1523 aa
MTQPRPDEFKPPQECPVFEPSWEEFADPFAYINKIRPIAEKTGICKVRPPPDWQPPFACD
VDRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCSLKIPHVERKILDLYQLNKNV
ADEGGFDIVCRDRRWTAIALKMGFAPGKAVGSHLRSHYERLLYPYNLFQSGANLLAPELA
SKLMRLVSAPELDTFVQEPTLPVATSDKECKPPDLTERQHFVEPTESCCNSAHRAKRMRA
ESGCVKTEPGTEPCENNRPNLRRRMGSFVAKPEPDIPILVKQEPIEPVSEADKNKSRYKK
KPSLDAPPPAVSVVDLYMCLVCGSGSDEDRLLLCDGCDASYHTFCLIPPLHDIPKGDWRC
PKCLAQECSKPQEAFGFEQAYRDYSLRAFGEMADSFKSDYFNMPVHMVPTELVEKEFWRL
VSTIEEDVTVEYGADIASKEFGSGFPIKNGRFKVSEKDEKYLKCGWNLNNMAMMDPSVLT
HVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQLEAV
MKKLAPELFQIQPDLLHQLVTIMNPNTLMSYGVPIYRTNQCAGEFVITFPRAYHSGFNQG
FNFAEAVNFCTVDWMALGRQCVDHYRLLHRYCVFSHDEMICQMASKANSLDVVLASAVQK
DMKDMVREEQDLRDKVRKMGVLRCEQAEYDLLQDDERQCAKCRTTCFLSAITCPCSPGQL
VCLHHIQDLCSCPLTNYTLNYRFTLDDLYPMMNVVKQRAETYDEWASRVTETLEAKLDKK
KSLSVFRSLINESESKMFPDNDLLRQLRLVTQDAEKCFSVAQQLLNGKRQTRYRCGGGKT
QSQLTVQELRSFVRQLYNIPCSLPQAPKLKDLLNRIEDFQQHSEKVLMDEATSTAVIQSL
LDVSFDFDVELPELPILRERLEQARWLEGVQQTSAQPSTLTLETMRRLIDQGVGLTPHPS
VEKGMAHLQELLTVSEHWEEKTSILLKARPPPSIEVLSEAAEKVVGIPAYLPNCLMLKDS
ISRAREWLQEAEAFQDGESIPLFDKLSDMVLRGQAIPVQLDPLKHLEFLVTELQAWKESA
AKTFLMKNSHFTLLEVLCPRFEVGAGSPKRKSKKAKDCSKKKMVKLDCLSDVEKALLETK
DTTSALATLGEVRLREMWALSSLRAANESKLLPTADCMDLKVCVCQNPPMGAMLQCELCR
DAFHSVCVRAPSDSRSTQAWLCPDCRRSEKPSLDKVLPLLASLQRIQVRLPEGDALHYLV
ERTVSWQQRARQVSASCGLPDLEESFRTSPSPVGKPPCLTPEWNRTSHDQMVFYTEQRCI
PLQGLSVELEELMVEGLLLQVSLPEITQLYHVLLNGLGAHHTHGRTSQQEDDPSDCDKRK
QCNSQGRSSPQKEDGLKKDVVNGAEKKAKRRLEREALETERRDKAKKLQNKRQKMNKEKN
LERRAASTSSSPRSDFSQSDDSEEEMAMCPAEGCQQPEGDEVDWVQCDGSCNQWFHQVCV
GVTAELAEKEDYVCVSCTISDGR
NT seq 4572 nt   +upstreamnt  +downstreamnt
atgacccagcctcggccggacgagttcaagccgcctcaggagtgcccagtcttcgaacca
agctgggaggaatttgccgatccttttgcttatataaataagattcgtccaattgcggaa
aaaacgggtatttgtaaggtccgcccgcctccggactggcagcctccatttgcatgtgat
gttgacagactgcacttcactcctcggatacagaggctaaatgaactggaggcacagacc
agagttaagcttaacttcttggaccagattgcaaagttctgggagttgcaggggtgttct
ctgaagattcctcatgtggaaaggaagatattggacctgtatcaactcaacaagaatgtt
gcagatgagggcggatttgatattgtgtgtcgcgatagacgttggacggcgattgcgctt
aagatgggctttgctcctggcaaggctgttggctctcacttacggtcacactatgagaga
cttctctacccctacaacctcttccagagcggagccaacctcctggcaccagagcttgcg
tccaagctgatgcgcttagtgtctgctcctgaacttgacacgtttgtccaggagccaacc
ctgccagttgccacgagtgacaaggagtgtaaaccccctgacctgaccgagaggcagcac
tttgttgagccaaccgagtcctgctgcaacagcgcccacagagcaaagcgaatgagagct
gagtcgggttgtgtgaagacagaaccaggaactgaaccctgtgaaaacaacagaccaaat
ctgaggaggaggatgggctcttttgttgccaagcccgagccagacattcccattctagtg
aaacaagaacccatcgagccggtgagcgaggcagacaaaaacaagtctcgatataagaaa
aaacccagtcttgatgccccacctcctgcagtgagtgtagtggacctgtatatgtgtctg
gtgtgtggcagcgggagtgacgaggatcgtcttctgttgtgtgatggctgtgacgccagt
taccacaccttctgtctcataccccctctgcacgacatccccaaaggagactggaggtgc
cccaagtgcctggctcaagagtgcagcaaacctcaggaggcatttggctttgagcaggca
tacagggactactctttgcgggcttttggagaaatggcagactccttcaaatctgattac
ttcaacatgcccgttcatatggttcccacagagttggtggaaaaagagttctggcgcttg
gtgagcaccatcgaagaggacgtcacagtggagtacggagcagatatagcctccaaggag
tttgggagcggattccccatcaagaatggaagatttaaggtttcagaaaaggatgagaag
tacctgaagtgtggctggaacctgaacaatatggcgatgatggacccgtcagtgttgact
catgtcacagcagacatctgtgggatgactctaccttggctctatgtaggcatgtgcttc
tcctccttctgctggcacatcgaggaccactggagctactcaatcaactacctgcactgg
ggggagccaaagacatggtatggagcacctggctttgctgcggaacagctggaggctgtg
atgaagaaactagctccagagctgtttcagattcagccagatctcctccaccagctggtc
accatcatgaaccctaacaccctcatgtcctacggggttccgatttacagaaccaatcag
tgtgctggtgagtttgtcatcactttccccagagcctatcacagtggttttaaccaaggt
tttaacttcgctgaggctgtcaacttctgtactgtggactggatggcattaggccgccaa
tgcgtcgaccactacagactgctgcatcggtactgtgttttctcccacgacgagatgatc
tgccagatggcctccaaggccaacagtctggacgtggtcctggcgtcggctgtccagaag
gatatgaaggatatggtcagagaggaacaggacctacgagataaagtccgcaagatgggg
gtgttgcgttgtgagcaggcggagtacgatctcctgcaggatgatgagcggcagtgtgcc
aaatgtaggaccacctgtttcctgtctgccatcacctgcccctgcagccccggccagctg
gtctgtctccaccacatccaggacctctgctcctgccccctcaccaactacacactgaat
tatagatttacactggatgatctgtaccccatgatgaacgtggtaaagcagcgagctgag
acctacgacgagtgggcatcccgcgtgacggagactctggaggctaagttggacaagaaa
aaaagcttgtcagtcttccgctccctcattaacgaatcagagtccaagatgttccctgac
aatgacctcttgcgtcagctccgtttagtcacacaggatgcagagaagtgcttctcagtg
gcccagcagctactcaacggcaaaaggcagactaggtatcggtgtggtggggggaagacc
cagagccagctgaccgtgcaggagctgaggtcatttgtcaggcagctttacaacatccct
tgcagccttcctcaagcccccaaattaaaggatctcttgaatcgcatcgaagacttccag
cagcacagtgagaaagttctgatggatgaggccaccagcacagcagtaatccagagtctt
ctagacgttagctttgactttgatgtggagctgcctgaacttccaatactacgggagagg
ctggagcaagcccgttggctggagggtgtgcagcagaccagcgcccagccctccaccctc
accctggagaccatgcggaggctgatagaccagggcgtgggcctgacccctcacccctcc
gtggagaagggcatggctcatctgcaggagctactcactgtgtctgaacattgggaggaa
aagaccagcatcctcctcaaggccaggccccccccatcgatagaagtcctctctgaagca
gctgagaaggtggtgggtatacctgcttacctccccaattgtctgatgctgaaggactcc
atcagtagggccagggaatggcttcaggaagcagaggcatttcaggatggagagtccatt
ccattgtttgacaagctttctgatatggttctacgaggacaagccatcccagtccagctg
gaccctctaaagcatctggagtttctggtaacagagctgcaggcctggaaagagtctgca
gctaaaaccttcctcatgaaaaactctcacttcactctgcttgaggttctgtgtccaaga
tttgaggttggagcagggtccccgaaaaggaagtcgaaaaaagctaaagactgcagtaag
aagaagatggtgaagctagactgtctcagtgatgtggaaaaagcccttctagagaccaag
gacactacctcagctctggcaactctcggggaagtgcggttacgggagatgtgggccctc
tcctccctccgggcagctaacgagtccaagctcctccccacggcagactgcatggacctg
aaggtgtgcgtgtgtcagaatccccccatgggagccatgttacagtgtgagctctgccgg
gacgccttccacagcgtgtgtgtgagggctccctcagactcccgttcaacccaggcctgg
ctgtgtccagactgccgacgctcggagaagccctccctggacaaggtcctgcccttgctg
gcgtcgctgcagcgtatccaggtgcgtctaccggaaggcgatgcgcttcactatttggtt
gagagaacagtcagctggcaacagcgagcgcgacaggtctctgcctcctgtggccttcca
gacctggaggagagctttagaacttcaccatctccggttggaaagccaccatgtttgact
ccagagtggaacaggacaagtcatgatcagatggtcttctacaccgagcaacgatgcatt
cctctgcagggtctgagtgtggagctggaggagctgatggtggaagggctcctgctgcag
gtgtctctgccagagatcacacagctctaccatgtgttactgaacgggctgggagcgcat
cacacccacggacgcacgtcacagcaagaggacgacccctcggactgtgacaaacgcaag
cagtgcaactctcagggaagaagctctccacaaaaagaggatggcctgaaaaaggatgta
gttaatggagcagagaagaaggccaagcgacgcctggagagggaggctctggagacagag
cgcagggacaaggccaagaagctccaaaacaagagacagaaaatgaacaaggagaagaac
ctggaacgcagggcagcctcgacctcctcatctcctcgttccgacttctcccagtcagac
gactctgaagaggagatggccatgtgtccagcagagggatgccagcagccagaaggagat
gaggtggactgggtccagtgtgacggcagctgtaaccagtggttccaccaggtctgtgtg
ggtgtgacagccgagttggctgagaaagaggactatgtgtgtgtcagctgtacaataagc
gatggccgctga

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