Oncorhynchus gorbuscha (pink salmon): 124046128
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Entry
124046128 CDS
T07892
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
124046128 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ogo04040
]
124046128 (scn8aa)
Ion channels [BR:
ogo04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
124046128 (scn8aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
FraC
HB_ELP1
GPHH
New_glue
Motif
Other DBs
NCBI-GeneID:
124046128
NCBI-ProteinID:
XP_046222121
LinkDB
All DBs
Position
LG10:complement(42260118..42358581)
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AA seq
1974 aa
AA seq
DB search
MAAPLMAPPGPDSFKYFTAESLANIELRINEEKNKPPPKQDSSHRDDDDDNKPKPNSDLE
AGRNLPFIYGDIPSGMVATPLEDLDPFYQAQKTFIVLNRGKTIFRFSANPALYIISPFNL
FRRIAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKIVAR
GFCIDGFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVIWPINSTENYLANGSKGF
DWNEYINNDTNFYFLPGQLDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAF
LALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TMEEAEQKEAEFKAMLEQIKNQQEAAQEATQANAMATSAGTVSEDVAEDDGGGNLSCSSS
EMSKLSSKSAKERRNRKKKWRQKEQSQREEKGDCEKFVKSESDDGSKRSRFRFPDNRLGR
KSSIMNQSLLSIPGSPFLSRHNSKSSIFSFKGRGKDVGSENEFADDEHSTVEECEERRDS
LFSPYRRSSYTGYHHGGGKRNSTVDCNGVVSLISPGTGGRLLPEVKIDKASADDSPTTEV
EVKKKLSGSLMVSVDQLNTSFGRKERANSVMSVITNTLVEELEESQRSCPPCWYKFSNIF
LIWECCPIWLKIKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPHFEEVLSVGNL
VFTGIFAVEMFAKLVAMDPYYYFQEGWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLR
VFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLALIVFIFAVVGMQLFGKNYKDCVCKIAL
DCKLPRWHMHDFFHSFLMVFRVLCGEWIETMWDCMEVAGQGMCLIVFMMVMVIGNLVVLN
LFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWFKIKLAELVLSLTKKPPVED
EQKPLDDMYNKKLNCIANHSGVDINRDLDYTKNGNGTTSGIGSSVGKYMIDEDHMSFIHN
PNLTVCVPIAVGESDFENLNTEDFSSESENENSKEGLDDTSSSEGSTIDIKPDVEVEAVV
VEAVEEYLDPENCWTPECIIKYPCCDVPITHGWGKYWWFLRKTCYLIVEHNWFETVIIFM
ILLSSGALAFEDVYIQQRKTIRTILEYADSVFTYIFILEMLLKWVAYGFHKYFTNAWCWL
DFFIVDVSIISLVANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSI
MNVLLVCLIFWLIFSIMGVNLFAGKYYYCFNQTSEDNFLATEVNNKTQCLALINQNFTEV
RWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAIDSRRVEDQPIYEDNLYMYIYFVIF
IIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP
QNYIQGLVFDFVTQQVFDISIMMLICLNMVTMMVETDDQSDETENILYWVNFIFIVAFTI
EFVLKLFALRHYYFTNGWNVFDTVVVILSIAGMFLADIIEKYFVSPTLFRVIRLARIGRI
LRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGIDDMYN
FETFGNSMICLFMITTSAGWDGLLLPILNYPPDCDPTMENPGAPSTGNCGNPSVGIFFFV
MYIIISFLVVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPSASQFITFQK
LGDFADTLEHPFRVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRT
QMEERFVAANPSKVSYEPITSTLRRRQEDVSARCIQKAYRAHLLKRGFICKRRPKTKLEN
GGTNNEEKKESTPSTASLPSYDSVTKPDKEKQEENEGERKEKDRNQKDERESKC
NT seq
5925 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttatggcaccaccaggacctgacagcttcaagtattttaccgcggaa
tcattggctaacatcgagctccggatcaacgaggagaagaacaaaccgccgcccaagcag
gacagcagtcaccgtgacgacgacgatgacaacaaacccaagcccaacagtgacctggag
gctgggcggaatctgcccttcatctatggcgacatccctagtggaatggtggcgacacca
ctggaggatttggaccccttttaccaggctcagaaaacattcatagtgctaaacagaggg
aagacaatcttccgctttagtgccaaccctgccttgtacatcataagtccttttaatctt
ttcaggcgaatagctataaaaattttgatacattctcttttcagcatgatcattatgtgt
actattttgaccaactgtatattcatgacttttagtgatcctcctgagtggtccaaacaa
gtagagtacacgttcacagggatttatacgtttgaatctcttgtaaaaattgtcgctcga
ggattctgtatagatgggtttacattcctaagggatccatggaactggctggatttcatg
gtcatttctatggcatatataacagagtttgtggacctgggcaatgtctctgcgctgaga
acattcagagttctccgagcattgaaaactatctctgtcataccaggcttgaagaccatt
gtcggtgctctaatccaatctgtgaagaaattgtcagacgttatgatcctcacggtcttc
tgtctcagtgtcttcgctctgattggactacagctcttcatgggcaacctacggcaaaaa
tgcgtgatttggccaatcaactccaccgagaactacttggccaacggcagcaaaggcttc
gactggaatgaatacatcaataacgacaccaatttctacttcctgcctggacaattggat
gcccttttatgtggcaacagctcagattctggccgctgccccgagggctacacatgcatg
aaagctgggaggaatccaaactacggttacaccagcttcgatagctttggatgggctttc
ctggctctcttcagactcatgacacaggacttctgggagaacctctacatgctgaccctg
cgggcagcggggaagacctacatgatcttctttgtgctggtgatcttcgtgggttccttc
tacctggtcaatctgatcctggctgtggtggccatggcctatgaggagcagaaccaggcc
accatggaggaagccgagcaaaaagaggctgagttcaaagccatgctggagcagatcaag
aaccagcaagaggctgcacaggaggccacacaggccaacgccatggcgacgtcggcaggc
acggtgtcggaggacgtagcggaggacgacggtggggggaacctgtcctgtagctcgtca
gagatgtccaagctcagttccaagagcgccaaggagcggcgcaaccgcaagaagaagtgg
cgccagaaagagcagtcacagagggaggagaagggggactgcgagaagttcgtcaaatcc
gagtcagacgacggcagcaagaggagccgcttccgtttccctgacaaccggttgggtcga
aagtcttccatcatgaaccagtccctcctcagtatcccaggctcgccgttcctgtcgagg
cacaacagcaagagcagcatcttcagcttcaagggccgcggcaaggacgtgggctcggag
aacgagttcgccgatgacgagcatagcactgtggaggagtgcgaggagaggcgggactcc
ctgttcagcccgtaccgacggagcagctacacgggctaccaccatggcggcgggaagagg
aactcaacggtggactgcaacggcgtggtgtcgctgatcagtccggggaccggcggacgc
cttctgcctgaggtgaaaatagataaggcatctgctgacgacagtcccactactgaggtt
gaggtgaagaagaagctgtctggttccctgatggtgtctgtggaccagctcaatacctcc
ttcggaaggaaagagcgggccaacagtgtcatgagcgtcatcaccaacacactagtggag
gaactggaggagtctcagcgtagttgtccaccttgctggtataagttctccaacatcttc
ctcatctgggagtgttgtcccatctggttgaagatcaaggagattgtcaacctgatcgtc
atggaccctttcgtggacctggccatcaccatctgtatcgtcctcaacaccctcttcatg
gccatggagcactaccccatgaccccgcactttgaggaggtgctgtctgtgggaaatctg
gtgttcacagggatctttgctgtggagatgtttgccaagctggttgccatggatccttac
tactacttccaggaagggtggaactgctttgatggcttcattgtgaccctatcgttagtg
gagctggcattggctgacgtggagggcctgtccgtgctcagatcattccgattgctaaga
gtgtttaaactggccaagtcatggcccacactcaacatgctgatcaagatcatcggtaac
tctgttggcgccctgggaaacctgaccctcgtcttagcgctcatcgtcttcatctttgcc
gtggtcggcatgcagctgttcggcaagaactacaaagactgtgtgtgtaagatcgccctt
gactgtaagctgccccgctggcacatgcacgacttcttccactcgttcctgatggtgttc
cgggtgctgtgcggggagtggatcgagaccatgtgggactgtatggaggtggccggacag
ggcatgtgtctcatcgtcttcatgatggtcatggtcatcgggaacttggtggtgttgaac
cttttccttgccttgctgctgtcctcgttcagcgcagacaacttagccgcaacagatgac
gacggagagatgaacaaccttcagatctccgtcatccgcatcaagaagggcatcgcctgg
ttcaagatcaagctggcagagttggtgctcagcttgaccaagaagccgccggtggaggat
gaacagaaacctttagacgacatgtacaacaagaaactgaactgtatcgccaaccacagt
ggtgtggatatcaaccgcgacctggactacaccaagaatggtaacggcaccactagtggt
atagggagcagcgtcgggaagtacatgatcgacgaggaccacatgtccttcatccacaac
ccgaacctgaccgtgtgcgttcccatcgcggtcggagagtccgacttcgagaacctcaac
accgaggacttcagtagcgagtcggagaacgagaacagcaaagaggggctggacgacacc
agctcatcggagggcagcaccatagacatcaagcctgatgtggaggtggaggcggtggtg
gtggaggctgtggaagagtacctagacccagaaaactgttggacacctgagtgtattatc
aagtatccatgctgcgacgtgcccatcactcacgggtggggaaaatattggtggttcctg
agaaagacatgctatctaattgtggagcataactggttcgaaaccgtcattatctttatg
atcctactcagtagtggggccctggcttttgaggatgtgtacatccagcagaggaagacc
atcaggaccatcttggaatacgccgacagtgtgttcacatacatttttatcctagagatg
ttgctcaagtgggtcgcctacggattccacaagtacttcaccaacgcctggtgctggctc
gacttctttattgtcgatgtgtctataatcagtctggtagctaatgcactgggctactcg
gatctaggtcctattaaatcactaaggacactaagggccttgagacccctcagagccttg
tcacgttttgaagggatgagggtggtagtcaacgccctggtgggagccatcccctccatt
atgaatgtgttgctggtttgcctcatcttttggctgattttcagcatcatgggagtcaac
ttgtttgcgggcaagtactactactgtttcaaccagacctcagaggataactttcttgcc
accgaggtcaacaacaagacacagtgcctggctcttattaatcagaacttcactgaggtc
aggtggaagaatgtcaagatcaactttgacaatgttggtgctggatacctggctctgctt
caagtggcaacattcaaaggctggatggatatcatgtacgcagccatagactccagaaga
gtggaggaccagcccatctatgaagacaacctctacatgtacatctacttcgtcatcttc
atcatcttcggatccttcttcaccctcaacctcttcattggtgtcatcattgacaacttc
aaccaacagaaaaaaaagtttggaggtcaggacatcttcatgacagaggaacagaagaag
tactacaatgccatgaagaaactgggttcaaagaagccccagaaacccattcccagacca
cagaactatatccaagggttggtgtttgactttgtgacccagcaagtcttcgacatctcc
attatgatgttgatctgcctcaacatggtcaccatgatggtggagacagacgaccaatcg
gacgagacggagaacatcctctattgggtcaacttcattttcatcgtggcgttcaccatc
gagtttgtcctgaaactcttcgccctgcgccactactacttcaccaatggctggaatgtg
ttcgacacggtcgtggtcatcctgtccatcgcgggcatgttcctggctgacatcattgag
aagtacttcgtttcaccaacccttttcagggttatccgattggctcgaatcggccgcatc
ctgcgtctgatcaaaggagccaagggcatacggactttactcttcgccttgatgatgtca
cttccagccctgttcaacattggcctcctgctcttcctggtcatgttcatcttcagcatc
ttcggaatgtccaactttggctacgtcaaacacggggccgggatagacgacatgtataac
tttgagaccttcgggaacagcatgatctgcttattcatgatcactacttctgcaggctgg
gatggtctcttgctcccaatcctcaactaccctcctgactgtgacccaaccatggagaac
ccaggtgcaccgtctacaggcaactgcggcaacccctcagtcggcatatttttctttgtc
atgtatatcattatttccttccttgtcgtagtcaatatgtacatcgccatcatcttagag
aatttcagtgtagcgacagaagagagcgccgacccgctcagtgaagacgacttcgagacc
ttctatgaaatctgggagaaattcgacccctccgcttcccagttcatcaccttccaaaaa
ctgggtgactttgccgacaccctggagcaccctttccgcgttcccaaacccaacaccatc
gagctgatcgccatggacatgcccatggtcagcggcgaccgcatccactgcctggacatc
ctgtttgccttcaccaagcgtgtgctgggcgacagcggggagctggacatgctacgcacg
cagatggaggagcgcttcgtggcggctaacccctccaaggtctcatacgagcccatcact
tctacactgcgccggcgccaggaggacgtatccgcacggtgcatccagaaagcctaccgt
gctcacctgcttaaacggggcttcatctgcaagcgcaggcccaagaccaagctggagaat
ggtgggaccaacaacgaggagaagaaagagagcacaccctccaccgcctctcttccctcg
tacgacagcgtgaccaaacctgataaggagaaacaggaggagaacgagggagagaggaaa
gagaaggacagaaaccaaaaagatgagcgggaatcgaagtgttag
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integrated database retrieval system
