Oncorhynchus gorbuscha (pink salmon): 124046353
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Entry
124046353 CDS
T07892
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124046353
03041 Spliceosome [BR:
ogo03041
]
124046353
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124046353
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
124046353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
DUF3525
Motif
Other DBs
NCBI-GeneID:
124046353
NCBI-ProteinID:
XP_046222608
LinkDB
All DBs
Position
LG10:complement(65060742..65103139)
Genome browser
AA seq
1505 aa
AA seq
DB search
MEAVKAFNGELFSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQGVEKFVQKCKPEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAAVNTPGTPATPATPANIVSSLPDWASQF
SNTDTVAAVAQILQSPHGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQLTA
AATANPMQLNPLEQRISSFNKKMLGHFDFGNDSERSEDTKKDAQSSQMPMVSDSIFHQLA
EQLQQQNLEHFQKQLMEHQQKSMNMEGQDGIFGSENTAMPHQSSSQSQHPAPQNKTDDSI
DNQQQDMDLDDGPEMEEERFEPEDKKSKTVDTRSRTRSRSRSRSPRKRRSRSRSGSRKRK
HRKRSRSRSRERKRKSSRSYSSERQEAREREKERQKKGLPPIRSRFLSVCSTTLWVGQVD
KKASPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYCARQKLSTGSFKVVSKIIK
IAWALNKGVKQEYKQFWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNA
PEPMKEAVSQAVSVEPMTATNTQQTHQEAFSQQEAFSQQVSMMPVQLPVAQAVPAVGLVP
PSFPVSMAMPPPGYGPLPPFLRAGFNASQPPPGFMQTAGVPQQAGMGSAPISLVPASMSQ
AQDSMKDSPYGATIPGSFMPSALPGQGVFNQLQPGVQTQQAANDKMGQSADGMDAAAELV
LQGMQNAMSRGMGLLGMHPSASLPHPLHQQGLPGQRMPGLMPLDLRPTILQGAGARFPLL
MQQGLSQQSLLEASLHAQARARAASQMERFNRAEEAFNRGPNPPNESMSKAEEEPSSGAD
DSQQGGDQDYRFPPPQEKQSTGLLRTPPLEHRESMGGGAGGGGLGGGRPALLQTPVREPA
RDSVAGRLQALAGFTPQTSSRWGPLRGDFDERDMRSSPAAVSKGFQELRPGPNQGQNFPN
RFENQNRAGSVGGVGGGVCTGGPGGVGGGPAWSRGGVDAAAQFTDANMPQDLDECRRPWD
RQQRDRDFDFRKEMNGNRRERDSREKERDRERERDRGNRERGNREREQERDREREREKER
EKDRERERERERNKRGAWTPLLPLPQPLLPTPTLTPTLSLTQGKPQALLQLQSKLQPKPG
LLTKPGLLQTPTLLTRSTSHVPTKSLLQAPSQSLLQAPSQSLLQAPSQSLIQAPSQSPPL
TSHQSSQSPPKAPPQFTQFPTQAKNEARPGPKPQAEFHSSPQTHVYPKSESSPQTQSSPQ
NQSPPQNQASLQAQLLHPAHFPFQTKSSPQGQSSSRAQSPPQALSPQAPRTPEEITDTQG
EPEKPRWANESGKPQEEPMKEPEPMVEPPSRWVNGTGSRMDTDAVAEPTTTPSPNLALSM
SLVLTHSPVEPQCLPEPLDQQHPLQHVASCSSTKDVDNGLSEPMEEAEKQPVVEKTDTEG
TIITQ
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcaaagcattcaacggcgagctcttctcgttgaacgagtacaaacctcca
atctccaaggcgaaaatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagggcgtggaaaaatttgttcagaaatgcaagccagagtataaggtc
ccaggcctgtatgtcatggactccatcgtgcggcagtcacggcaccagtttggccaggac
aaggatgtgtttgctccgcgcttcagcaaaaacatcatcggaaccttccaacatctctac
cgctgcccctcagatgacaagagtaagattgtcagggtcctcaacctctggcagaagaac
gctgtcttcaagagtgacatcatccagccgttgctcgacatggctgcaggacttccccct
cccagtgtcaccccagtcatgaccagccgcgatgctgcagtcaacacacctggtacacca
gcgaccccggccaccccagccaacatcgtatccagtctgcctgactgggcgtcacagttc
tccaacacagacactgtagctgctgtggcccagatcctgcagagtccacacggccaacag
ctccagcagctggtgcagagcctgcagatgcagcagcagaagccccagccatctctgctt
caggcgttggatgcaggactggtggtccagttgcaggctctgacggcccagctcactgca
gccgccacagccaaccccatgcagctcaaccccctggagcagaggatctcctccttcaac
aagaaaatgttgggccattttgactttgggaacgattcagaacgctctgaagacaccaaa
aaggacgcccaatcatcccagatgcccatggtgtctgactccatcttccaccagctggct
gagcagctgcagcagcagaacctggagcacttccagaagcagctcatggagcaccagcag
aagtccatgaacatggaagggcaggatggaatatttgggtctgagaacacggccatgccc
catcagagcagcagccaatcacagcacccggcgccgcaaaacaagacggatgactcaatt
gacaaccagcagcaggacatggacctggatgacgggccagagatggaggaagagcgcttc
gaaccagaggacaagaagtccaagacggtcgacacgcggtcaagaacacgttctaggtca
cgatcaagatctcccaggaagagacggtccagatcacggtcaggctctcggaaacggaaa
caccgtaagcggtcgcggtcacgctccagagagcggaagaggaagtcgtcgcggtcctac
tccagcgagagacaagaagcccgcgagcgagagaaagagcgccagaagaaaggactgcct
cccatccgatccaggtttctcagtgtgtgcagcaccactctgtgggtgggacaggtggac
aagaaggccagtccgcaggacctcaccaacctgtttgaagagtttggtcagattgagtcg
atcaatatgatccctcctcgtggctgtgcctacatctgtatggtccacagacaggatgcc
tactgcgccagacagaaactcagcactggttcattcaaggtcgtctccaagatcatcaag
attgcgtgggcgctgaataagggagtgaagcaggagtataagcagttctgggacatggac
ctgggggtcacctacatcccctgggagaaggtcaagttggacgacctggacggctttgct
gagggaggcatgatcgaccaggagactgtcaacgccgagtgggaagcagccaagaatgcg
ccagagccaatgaaggaagctgtgagccaggctgtgagtgttgaacccatgacagccacc
aacacccaacagacccaccaagaggctttcagccaacaggaggctttcagccaacaggtc
tccatgatgcctgtacagctccctgtggctcaggctgtccctgccgtgggtcttgtgcct
ccatccttccctgtttccatggcgatgcccccgccaggctatggccccctgccccccttc
ctcagagcgggtttcaacgcctcccagcctcctccaggtttcatgcagacagcaggtgtt
cctcagcaagcaggcatgggctcagctcctatatctctggtgccggcctccatgtcgcag
gctcaggacagcatgaaggactccccatacggagctactatcccggggagcttcatgccc
tctgccctccctggacaaggggtcttcaaccagcttcaacctggagtccagacgcagcaa
gcagccaatgacaagatgggccaatctgctgacggcatggatgcagctgcagagttagta
ctgcaaggtatgcagaatgcaatgagtcgtggtatgggtcttctggggatgcacccctca
gcttcccttccccaccccctgcaccagcagggcctgcctggccagaggatgcctgggctg
atgccgctggacctccggcctactatactccagggtgccggtgcccggttccccctcctg
atgcagcagggcctgtcccaacagagcctcctggaagcgtccctccatgcccaggcacgc
gccagagcggcctcccagatggaacgcttcaacagggccgaggaggccttcaaccggggg
cccaaccccccaaacgaaagcatgtccaaggctgaggaggagccttcctctggagctgac
gatagccagcagggaggggaccaagactaccgcttccctccgccccaggagaagcagagc
acaggcctactgaggacccctcccctggagcacagagagtccatgggtggaggagctggt
ggtgggggtttgggcggaggcagacctgccctgctccagaccccagtgagagagccagct
agagacagcgtggcagggcggcttcaggccctcgccggcttcaccccccagacctcgagt
cgctgggggccactcagaggggactttgatgagcgtgacatgcgcagctctccggccgcg
gtctccaagggcttccaggaattgcgccctggccctaaccaagggcagaactttcccaac
cgctttgagaaccagaaccgcgctggatcagtaggaggggtaggaggaggagtatgtact
ggtggtcctggtggtgttggagggggcccggcgtggagtcgtggtggagttgatgctgca
gcacagttcactgatgctaacatgccccaggacttggatgagtgccggcgcccttgggac
aggcagcaacgggacagggactttgacttcaggaaggagatgaatggcaaccggcgtgag
agagacagccgtgagaaggagagggaccgcgagagagaaagggaccgtggcaaccgtgag
cgtggcaaccgtgaacgagagcaggagcgtgaccgggagagagagcgtgaaaaggagagg
gagaaggatcgggagagggaacgtgagagggaacgtaacaagcgtggagcctggacaccc
cttcttcctctaccacaacccctgctccctactcctaccctgaccccaaccctctccctg
acccaaggcaaacctcaggccctgctgcaactacagtccaagcttcaacctaaacctgga
ctcctaactaaaccgggtctgcttcaaactccaactctcctaactcggtcaacatctcat
gtcccaaccaagtctcttcttcaagccccatcccagtctcttcttcaagccccatcccag
tctcttcttcaagccccatcccagtctcttattcaagctccatcccagtctccacctcta
acctctcaccagtcatcccagtctccacctaaagctccaccccagttcacccagtttcca
actcaagccaagaatgaagctcgccccggtcctaagccccaggcagaattccattcctct
ccccagacacatgtgtaccccaagtctgagtcctcaccccagacccaatcctctcctcag
aaccagtcaccaccccaaaaccaggcttcccttcaggcccagttgctgcaccctgcccat
ttccctttccagacaaagtcctctccccagggccagtcatcatcacgtgcacagtcccca
ccccaggccttgtccccacaggccccccgcaccccagaggagatcactgacacccagggg
gagccagagaagccccggtgggccaacgagtcagggaaacctcaggaagaacctatgaaa
gaacctgaacccatggtagaacctccatctcggtgggtcaatggaacagggtcgaggatg
gacactgacgcagtggctgagcccaccactaccccgtcccccaatcttgccctgtcaatg
tcactggtcctcacacacagccccgtggagccccaatgcctgccggagccgctggaccag
cagcatcccttgcagcatgtcgcctcttgctcctccacaaaggatgtagacaatggactg
agtgagccgatggaggaagctgagaaacagccagtggtagagaaaacagacactgagggg
acaatcatcactcagtag
DBGET
integrated database retrieval system
