Oncorhynchus gorbuscha (pink salmon): 124046524
Help
Entry
124046524 CDS
T07892
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04137
Mitophagy - animal
ogo04140
Autophagy - animal
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124046524
04137 Mitophagy - animal
124046524
04148 Efferocytosis
124046524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124046524
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
124046524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
124046524
NCBI-ProteinID:
XP_046222929
LinkDB
All DBs
Position
LG10:73086790..73125858
Genome browser
AA seq
758 aa
AA seq
DB search
MNTVVPEKKSRVSSERRKEKSRDAARYRRGKESEVFYELAQELPLPHGVTSNLDKASIMR
LAISYLHMRKLLSTEDKAVEKEQEESEMDSQLNGSYLKALEGFLMVLSKDGDMIYLSENV
NKCLGLAQFDLTGLSVFEYTHPCDHEELREILVHRTGTSKKSKGPNTERSFFLRMKCTLT
SRGRTVNVKSSTWKVLHCSGHVRVHEAPTEQRPIGHKEPPVSYLVLVCDPIPHPSNIEAP
LDTKTFLSRHTLDMKFTYCDERITELMGYDPEDLINRSVYEYCHALDADYLTKTHHNLFV
KGQVSTGQYRMLAKMGGFVWVETQATVIYNNKNSQPQCVVSVNFVLSGVEEEKMVLSLEQ
TEDMRSVKKELVEEEEDEGSEAEVSPVLLKEEKVDVIKLFTQAMEAQPLASLYDRLKEEP
EALTLLAPAAGDTIISLDFGSPDSDILLKEVPLYNDVMLPSTSDKLALPHSMLPPNEQPL
IPSASVDTKADPNSFSTPGSHSSTEPDSPLNFCFPMDSDSSAALKLDLVERLFAIDTEPK
TPFTSQGMEDLDLEMLAPYIPMDDDFQLRTLSPVEPPSCDPAQPLVSSSLCSPLHLTQDV
HSYTDSPFSAPTSRTASPAPELAASPCPASLLTMRAPQMDREMSLRTLATKNSQRKRKLS
LSQAVGIVNGALLQDPPGPGKQLKVSELGSSEAPSNRTILLLPTDLASCLLGISSEGSGS
RFTLPQLTRYDCEVNAPVVGRQHLLQGEDLLCALDQVN
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagttgtcccagaaaagaaaagcagggtgagctcggagcggaggaaggagaag
tcccgggatgcagcgcgataccggaggggcaaggagtcggaggtgttctacgagctggcc
caggagctgcccctgccccacggtgtcacctccaacctagacaaggcttctatcatgaga
ctggctatcagctacctgcacatgaggaaactgctaagcacagaagataaggcagtagag
aaggagcaggaggagagtgagatggactcccagctgaatggctcctatctgaaggctctg
gagggcttcctcatggtgctgtctaaagacggggacatgatctatctctctgaaaatgtc
aacaagtgcttgggtctggcacagtttgatctgacaggacttagtgtgtttgagtacaca
cacccctgtgaccacgaggagctaagggagatcctggtacacagaacagggacctctaaa
aagtccaagggaccaaacacagagcgcagcttcttcctgcggatgaaatgcaccctcacc
agcagggggcgcactgtcaatgtcaaatcatccacttggaaggttctccactgctcaggc
catgtgcgagtccatgaagccccaactgagcagaggcccattgggcacaaggagccgccc
gtctcctacctggtgctagtctgtgaccccatcccccacccctccaacatcgaggcgcca
ttggacaccaagaccttcctcagccgccacacactggacatgaagttcacctattgtgac
gagagaatcactgagctgatgggctatgatccagaggacctgataaatcgctctgtttat
gagtactgccatgccttggacgcagactacctcactaagacccatcacaacttgtttgtt
aagggccaggtgagcacaggccagtaccgcatgctggctaagatgggtggctttgtgtgg
gtggagactcaggccactgttatctacaacaacaagaactcccagccccagtgtgttgtc
tctgtcaactttgtgctcagtggcgttgaagaggagaagatggtgctgtctctagagcag
actgaggacatgaggtctgtaaagaaggagctggtggaggaggaagaggacgagggctca
gaggcagaggtgtcccctgtgctcctgaaggaggagaaggtggatgtgattaagctgttc
acccaggcaatggaggcccagccgctggcgagcctgtatgacagattgaaggaggaacca
gaggccctcacccttctggccccggccgcaggggacaccatcatctccctggacttcggc
agccccgactctgacatcctgctgaaagaggtgcctctctacaacgatgtgatgctgccc
tccaccagtgacaagctggccctgcctcactctatgctgccccccaatgagcagcccctg
atacccagtgcctcagtggacaccaaggcagatccaaactccttcagcaccccaggcagc
cacagctcaactgagcctgacagcccgctgaacttctgttttccaatggactctgacagc
agtgctgcgctgaaactggacctggtggaaagactgtttgccatcgacacagaacccaag
acaccttttacctcacagggcatggaggatctggacctggagatgttggctccatacatc
cccatggatgatgacttccagctgcgcaccctgtccccagtggagcccccatcgtgtgac
ccagcccagcccctggtgagctcttctctgtgctctcctctgcacctcacccaggatgtc
cacagctacacggattccccctttagtgccccaacaagccggacagcttccccagccccg
gagctggcagctagcccttgccctgcctccttactcaccatgagggcgcctcagatggac
agagagatgtccctcaggacactggccaccaagaactcacagcgcaagagaaagttgtct
ctgtctcaggctgtcggaatagtaaatggggcattgctccaggaccctcctgggccaggt
aaacagctcaaggtgtctgagctgggcagctctgaggctccctccaacaggaccatactg
ctcctacctacagaccttgcaagctgcctgcttggcatctcctcggagggcagcggctca
cgcttcacccttccacagctgacccggtatgactgtgaggttaatgcccccgtggttggt
cgccagcacctgctgcagggcgaggatctgctgtgtgccctggaccaagtcaactga
DBGET
integrated database retrieval system
