Oncorhynchus gorbuscha (pink salmon): 124046821
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Entry
124046821 CDS
T07892
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04140
Autophagy - animal
ogo04148
Efferocytosis
ogo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124046821
04148 Efferocytosis
124046821
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124046821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124046821
Membrane trafficking [BR:
ogo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
124046821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
UN_NPL4
Beta-prop_HPS5
Beta-prop_RIG_2nd
Lgl_C
WD40_like
Motif
Other DBs
NCBI-GeneID:
124046821
NCBI-ProteinID:
XP_046223541
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Position
LG10:97753889..97796474
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AA seq
876 aa
AA seq
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MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKNNAGTNRFEVTLEKSTK
NFSKKIQQLFVVSQYKILVSLLENNIHVHDLLTFQQITVVSKARGATLFACDLQQSPSGE
AQLRMCVAVKKKLLLYYWKDREFYELQGDFAAPDIPKSMAWCQNSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKYALNWTDIPIAME
HQSPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPADYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKHL
SDSEPSTPSPLMEGIPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEES
EYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLV
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELTIPYLEHIVHVWE
ETEPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLLCFLEIST
CYEPGCLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAEEYCHRHYDKETD
RSQDVYLSLLRMYLSPPDVHCLGPIKMELLEPQANLMAALHVLELHHSKLNTTKAIDLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCIITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRGVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcttacgaaccggtccctatcctggagaaactgcctctgcagattgactgt
cttgctgcatgggaggactggcttctggtaggcactaaaccaggccatctcctgctctac
aggataaaaaataatgcaggtaccaacaggtttgaggtaactctggagaagtccaccaag
aacttctcaaagaagatccagcagctgtttgttgtgtcacagtacaagatcctcgtcagt
ctgttagagaacaacatccatgtccacgacctcttgaccttccagcagattactgtggtc
tccaaggccagaggggcaacgctcttcgcctgtgacctgcagcagtccccctcgggagaa
gcccagctgaggatgtgtgttgctgtgaagaagaagctactgctgtactactggaaggac
agggagttctatgagctacagggggactttgctgctccagacatcccgaagtccatggcc
tggtgtcagaactccatctgtgtaggctttaagagagactactacctcatccggatggat
gggcgtggctccatcaaggagctcttccctacggggaagcagctggagcccctggtggcc
cccctggctgatggaaaggtggcggtgggccaggatgacctcacggtggtgctcaacgag
gagggggtctgcactcagaagtatgctctcaactggactgacatccccatcgcaatggaa
catcagtccccctacatcatagctgtcctgcctcgctatgtggagatcaggacctttgaa
cccagactgctggtccagagtgtggagctgcagagaccacgattcatcacctcagctggg
cccaatatagtgtacgttgccagcaaccattttgtctggcgcctggtgcctgtgtccatc
gccagtcagatcagacagttactacaggacaagcagtttgaactggccctgcaactggcg
aatatgaaggatgacgtggaaggagataagagacagcagattcaccacatccagaatctc
tatgccttcaatctgttctgtcagaagaggttcgacgactccatgcaggtgttcgctaag
ctcggcacagatccgacccatgtgattggtctgtatccagacctgctccctgctgactac
cgtaaacagctgcactaccccaaccccctgcccagtctgtctggagcagaactggagaag
gctcacctggcgctcatagactacctgacacagaaacgcagtcacctggtgaagcacctg
agcgactccgagccgtccaccccgtctcccctcatggaagggattcccaccatcaagagc
aggaagaaactcctgcagatcatcgacaccacgctgctcaaatgctacctgcataccaac
gtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgaggagagt
gagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaagaag
ggcctgcatcagaaagccctacaggtgttgttggaccagtccaccaaggctaactctcct
ctaaagggacatgagaggacggtgcagtacctccagagactggggatggagaatctggtc
atcatctttgagttctctccctgggttctgaagatctgtcctgaggacggactcaagatc
ttcactgaggacctgacggaggtcgagaccctgcccagagacaaggtcctgaacttcctg
aaggagggctttaaggagctgactatcccctacctggagcacatcgtacacgtctgggag
gagacggagccagagttccataacgtcctcattcagctgtacctggagagggtccagggg
ctcatgaagcagtacctcaactccctgcccgagggggttcctgcagtggctgctgggaag
gaggagggggacctgggagagtttaggaacaagcttctatgtttcctggagatctctacc
tgctacgagcctggatgtcttatcagtgacttcccctttgacggtcttctggaggagagg
gccctgctgctgggtcggatggggaaacacgaacaggccctcttcatctacgtacacgtc
ctgaaggatacacacatggcagaggagtactgtcataggcattatgacaaagagacggac
agaagccaggatgtgtacctgtctctactgcgcatgtacctgtcccctcctgacgtccac
tgtcttgggccaatcaaaatggagctgttggagccacaggccaatctaatggcagctcta
catgtcctggagctgcaccacagcaagctgaatacaactaaggccatcgacctgctgcca
gccaacactcagatcagagagatccgtgtgttcctggagagtgttctggaggaaaaggcc
cagaggaaacgctttgaccaggtcctcaagagtctgctgcaggccgagttcctacgggtc
caggaggaacgcatctttcaccaacaggtgaagtgtatcatcacagaggaaaagacctgc
agggtctgtaagaagaagataggtaacagtgccttcgccaggtatcccaacggtgttgtg
gttcattacttctgctgtaaggaccgaggggtgtgtcctacggagcagtga
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