Oncorhynchus gorbuscha (pink salmon): 124047459
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Entry
124047459 CDS
T07892
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124047459 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124047459 (bard1)
04121 Ubiquitin system [BR:
ogo04121
]
124047459 (bard1)
03036 Chromosome and associated proteins [BR:
ogo03036
]
124047459 (bard1)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124047459 (bard1)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
124047459 (bard1)
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
124047459 (bard1)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
124047459 (bard1)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
124047459 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_10
zf-RING_UBOX
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
124047459
NCBI-ProteinID:
XP_046223759
LinkDB
All DBs
Position
LG01:complement(100891386..100921155)
Genome browser
AA seq
824 aa
AA seq
DB search
MDPDLCTDEGWTKTKEAVAHFRKLLLCSKCSKLMNEPVCLGVCKHMLCRSCAGPQAGEGC
VVCHSPAWVKDIRINRQLSNITELYGNLDSLLNPTGSDYSDALPITPPAQSDKSVLKHKK
NFKIWFSPRSRKVRCRVEKPAVVPLPEAGSGTVKAAPRHPETLPESKGKDLSVFNFNSSS
QDSGSSSPQRATNYEKKKATKKTRNGGGVRKPAAGGGQKPTKHEETKQNVKTQRLEAINQ
QWGFGGAREGDVGEEEEQVTAEGEHRSSKRVSFQSPATLPATAAPQTEDLPQGNNIILSP
SRSILKVVQPGENVPLSEDQDGPSPHTTPSQLDKISAKQHSKPNEEMTKNPDLPSPPKRT
PKRFCVEDKNISQCTPKKPKASPGQGRRPAVDRVVLPAMHTSPSPAASPRQGRTSTSTRI
SREGEQQWGSSLCSPAPLGKRSPGRLSQNSPAVVKRNHKGETPLHLAAIKGDVETVKELL
DQGADPNLKDNAGWTPLHEACNLGHLGVVEVLVERGGVLLNTPGYKNDSPLHDAVRNGHT
GIAMLLLQHGASQSVLNMFGLRPVDYAVSPEMQAILLAASEGPHPVNSPLSPSPSLNKAS
EGVRLEEQAVVLGSKLSQSQQTRLAKLGHLLGGKRADAFSCSVTHVVVPDGPMPTTLSTL
LGLLNGCWVLNFSWVEACLQADSWISESDHEAGAGPQRSRINRHSLLPPLLDGCFFYLMG
SFRKPPRDELLQLVREAGGQILTRQPKPDSDVTQTLSAAAYHASLGSDQALCTQYIIYDP
QGSYRPPRVRLGKVWSAPSTWVVNCISAFQLLPVPELESDTPGV
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatctttgcaccgacgaaggctggacgaaaacgaaggaggctgtcgcgcat
tttcgaaaacttctgttgtgctcaaaatgttcaaaactgatgaacgaacctgtgtgcctc
ggggtttgtaaacatatgctttgcaggtcgtgtgctggtcctcaggctggagagggatgt
gtggtgtgtcacagtcctgcctgggtgaaagacattcggatcaacagacaactcagcaat
atcacagaactctatggcaacctagactcactgctcaatcccactggctccgattactcc
gatgcccttcccattacaccaccagcacagtctgataaatctgtcttaaagcacaagaag
aacttcaagatctggtttagtccccgcagccgcaaggtgcgctgccgggtagagaagcct
gcggttgtgcctctcccggaggctgggagtgggactgtgaaagctgctccaagacatcct
gagacactacctgagtctaaaggcaaagacctgtctgtcttcaacttcaactcctcctcc
caagactctggctcctcctctcctcaaagggcgactaactatgaaaagaagaaagcgact
aagaagacgagaaatggtggtggtgtcaggaagcctgcagctgggggtgggcagaaacca
accaagcatgaagaaaccaagcagaatgtcaagacacagaggctggaggcaatcaaccag
cagtggggctttggcggagcgagagaaggagatgtcggagaggaagaagagcaggtcact
gcagagggagagcacaggtctagtaaaagagtttccttccaaagtccagccaccttgcct
gccactgcggcgcctcagacggaggatctccctcaggggaacaacataatcctcagcccc
agcagaagcatcctgaaggtggttcagccaggagagaacgtcccactctctgaggaccag
gacggtccaagcccacacaccaccccttctcagctggataagatatctgcaaagcagcac
tccaaaccaaatgaagaaatgactaaaaaccctgacctgccctcccctcctaagcgcact
cccaaaagattctgtgtggaagataaaaacatctcacagtgtaccccaaagaaacccaag
gcatctcctggccagggtagacgtccggcagtggacagggttgtactcccagccatgcat
acctcgccctcccccgctgccagccccagacagggtcgaacctccaccagcaccaggata
tccagagaaggagagcagcagtggggcagtagtctgtgttcccccgcccccctggggaag
agatccccgggcagactgtcacagaacagcccagcggtagtgaagagaaaccacaagggg
gagacacccctacacctggcagcaataaagggtgatgtggagaccgtgaaggagctccta
gaccaaggggctgaccccaacctgaaagacaatgctggatggacaccgctgcacgaggca
tgtaacctgggccacctgggtgtagtggaggtgttggtggagaggggaggcgtgctgttg
aacacaccaggctacaagaacgattctcctctacacgacgctgtcaggaacggacatact
ggcatcgccatgctactgctgcagcacggggcttcgcagagcgtcttgaatatgtttggc
cttcgccctgtggactatgccgtgagcccagagatgcaggcaatccttctggcagcctct
gaaggaccccacccagtcaactcacctctcagtccttcacccagcctcaataaggccagt
gaaggtgtgagactggaggaacaggcagttgtactgggtagtaaactgtcccagtcccaa
cagacccggctggccaaactgggacatctcctgggaggaaagagggcagacgccttctcc
tgctctgtcactcatgtggtggtaccagacgggccgatgcccaccaccctgtccactctc
cttggcctcctgaacggctgctgggtcctcaactttagctgggtagaggcgtgcctgcag
gcagatagctggatctccgagagtgaccacgaagcaggagcaggaccgcaacgcagccgc
attaacagacacagcctgctgcccccgctgttggacggttgtttcttctacctcatgggc
tccttcaggaagccccccagggacgagctcctccagctggtgagagaggcagggggccag
attcttacccgacagcccaaaccagacagtgatgtgacccagaccctgtctgctgcagcc
taccacgcctctctgggctcagaccaggccctgtgtacccagtacatcatctatgatccc
cagggttcttacaggccacccagggtgaggttaggaaaggtgtggtcagctccatctaca
tgggttgtaaactgtatatcggccttccagctactgccagtgcctgagcttgaatcagac
acacctggtgtgtaa
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