Oncorhynchus gorbuscha (pink salmon): 124047945
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Entry
124047945 CDS
T07892
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124047945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124047945
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124047945
mRNA degradation factors
5'-3' decay
Lsm complex
124047945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
124047945
NCBI-ProteinID:
XP_046224254
LinkDB
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Position
LG11:70468765..70473452
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AA seq
147 aa
AA seq
DB search
MRFTSRPKMNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLQQTVERIHV
GKRYGDIPRGIFIVRGENVVLLGEIDLEKESDTSLQQVCIEDILEEQRLQQQSRQEAEKT
KHLALKERGLVMPRPDIMDDYGVQHQY
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttacaagccgaccaaaaatgaactacatgccaggaacagccagcctcatcgag
gatatcgataaaaaacatctcgtcctgctccgagatggaagaacgttgatcggctttctc
agaagcattgatcagtttgccaacctggtgctgcagcagacggtggagaggatccacgtg
ggcaagaggtatggagacatccctcgaggaatctttatcgtcaggggagagaacgtagtc
ctcctgggggagatcgacctggagaaggagagtgacaccagtctgcagcaggtgtgtatt
gaggacatcctggaggaacagcgactgcagcagcagagcaggcaggaggcagagaagacc
aaacacctggccctgaaggagagaggcctggtcatgcccagaccagacatcatggacgac
tatggagtacagcatcaatactga
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