Oncorhynchus gorbuscha (pink salmon): 124048057
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Entry
124048057 CDS
T07892
Name
(RefSeq) calpain-1 catalytic subunit-like isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04141
Protein processing in endoplasmic reticulum
ogo04210
Apoptosis
ogo04217
Necroptosis
ogo04218
Cellular senescence
ogo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124048057
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
124048057
04217 Necroptosis
124048057
04218 Cellular senescence
124048057
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124048057
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ogo01002
]
124048057
Enzymes [BR:
ogo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
124048057
Peptidases and inhibitors [BR:
ogo01002
]
Cysteine peptidases
Family C2: calpain family
124048057
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Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
124048057
NCBI-ProteinID:
XP_046224397
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Position
LG11:6060253..6111232
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AA seq
702 aa
AA seq
DB search
MSGGISASIATGRLRAEGMGSNDHAVPFLEQDYEALRQECLETGCLFQDPSFLAEPPSLG
FKELAPFSAKTRDVEWMRPTELTDDPQFILGGATRTDICQGALGDCWLLAAIASLTLNER
LLHRVVPHGQSFQEDYAGIFHFQFWQFGEWVDVVIDDRLPTKNGEIMFVHSAEGNEFWSA
LLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELRKAPRDLYRIIGKALDRGSLLG
CSIDITSAFDMESVTFKKLVKGHAYSVTGLKKVDYQGQVERLIRVRNPWGQVEWTGAWSD
NSPEWDELDPSEREDLHLKMEDGEFWMSFQEFLRQFSRLEICNLTADALSEDGLSHWNTI
KFHGMWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPEDEEVACSFLVALMQKDRRRY
RKQGQDMHTIGFAIYEIPEEYRGCQNVHLKKDFFLTHSSCARSETFVNLREVSNRLCLPP
GEYLIVPSTFESGQEADFVLRVFTEKQSETEELDDEISADLEDEDDISEDDIEDSFKSMF
SQLAGEDMEISVRELRTILNRVLTRHEDLKTDGFSTESCRSMVSLMDKDGTARLGLVEFQ
MLWNKIRKWLVIYREYDMDKSGSMSSYEMRLAVESAGFKLNNRLNQVLVARYAENEAIDF
DNFICCLVKLEAMFRSFQQLDKEGEGVAEMNITEWLYMTMCG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggggaatctctgctagcatagccaccggcagactgcgagctgagggaatgggc
tccaacgaccacgccgtacccttccttgagcaggactatgaggctttgaggcaggagtgt
ctggagacggggtgtctgttccaggacccctccttcctagccgagcctccctctctgggc
ttcaaggaactggcccccttctccgccaagaccagggacgtggaatggatgagacccacg
gagctgacagatgaccctcagttcatcctgggaggagctaccagaacagacatctgccag
ggagctctaggtgattgctggctcctagcagccatagcctctctaaccctcaatgagagg
ctgctccaccgagtggtccctcatggtcagtccttccaagaggactacgctgggatcttc
cactttcagttctggcagtttggtgagtgggtggacgtggtgattgacgaccggctgcca
acgaagaatggagagatcatgttcgttcactcagccgagggaaatgagttctggagcgcc
ctgctggagaaggcgtacgccaagttgaatggttcctacgaggctctgtctggaggcagc
accacagaaggctttgaggacttcaccggcggtgtgtctgagatgtacgagctccgtaag
gctccacgggacctgtacaggatcatcggcaaagccctggacagaggctccttgctgggc
tgctccatcgacatcaccagtgcctttgacatggagtctgtgacgttcaagaagctggtg
aaaggtcatgcttactcagtcacaggcctgaagaaggtggactaccagggtcaggtggag
aggctgatcagggtgaggaacccctggggacaggtggagtggactggcgcctggagtgac
aattctccggagtgggatgagttggacccatctgagagagaggacctgcatctaaagatg
gaggacggagagttctggatgtcgttccaggagttcctgaggcagttttcccgtctggag
atctgtaacctgacggcggacgctctgagtgaggacggcctcagccactggaacaccatc
aagttccacggcatgtggagacgggggagtaccgccgggggttgccgtaaccaccccaac
acgttctggatcaacccccagtataagatcactctgctagaggaggacgacgaccctgag
gatgaagaggtggcttgtagcttcctagtggctctgatgcaaaaggacaggaggaggtac
cggaaacagggtcaggacatgcataccatcgggttcgccatctacgagattccagaagag
tacaggggctgtcagaacgtgcacttaaagaaggacttcttcctgacccactcatcctgc
gcccgctcggagaccttcgtcaacctgagagaggtcagcaaccgtctttgtctgcctcca
ggagaatatctcatcgtcccctccaccttcgagtctggccaggaggccgacttcgtcctg
cgagtcttcactgagaaacagtctgagacagaagagctagacgatgaaatctcagcagat
ctggaagatgaggatgacatcagtgaagatgacatcgaagactcattcaaatctatgttt
tctcagctggcaggagaggacatggagatttctgtccgcgagcttaggaccatcctgaac
agagtattgactagacacgaagacctgaagacagacggcttcagtacggagtcctgtagg
agcatggtcagcctcatggataaggatggcactgcccgtctcggcctggtagagttccag
atgctctggaataagatcaggaagtggctggtcatctatagagaatatgacatggacaag
tcgggatccatgagctcctatgagatgcgacttgctgtggagtcggcaggttttaaactg
aacaacaggctgaatcaggtcctggtggctcgctatgctgagaacgaggccatagacttt
gacaacttcatctgctgtctggtcaaactggaagccatgtttagatctttccagcagcta
gacaaggagggagaaggagtggctgagatgaacatcactgagtggctgtatatgaccatg
tgtggttga
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