KEGG   Oncorhynchus gorbuscha (pink salmon): 124048205
Entry
124048205         CDS       T07892                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124048205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ogo03041]
    124048205
   03036 Chromosome and associated proteins [BR:ogo03036]
    124048205
Spliceosome [BR:ogo03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    124048205
 Complex B
    124048205
 Complex C
   U2 SnRNP specific factors
    124048205
Chromosome and associated proteins [BR:ogo03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    124048205
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_ECM29 HEAT_EF3_N Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N DUF5870 UNC45-central DUF2298
Other DBs
NCBI-GeneID: 124048205
NCBI-ProteinID: XP_046224697
LinkDB
Position
LG01:complement(104686151..104711396)
AA seq 1329 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAA
EQTPGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPG
HTTPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRK
SRWDETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDER
NRPLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQ
INDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAA
LRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL
VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVV
ASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLV
DEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIP
LMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFF
KHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKI
MGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGT
VLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREW
MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALE
GLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPY
LRYELEYFL
NT seq 3990 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacatagaggcccagatcttggagatccagggc
atgaaagctgccctggtggaggagggaggagatcagggtgtgggcctggactctactgga
tactacgaccaggagatctacggtggcagcgatagccgcttcgctggatatgtcacctcc
atcgcggccaatgaacaggaggatgatgatgaggaggactcgtcaacgagtctacttgga
cagaagaaaccgggatatcacgctccggtggctatactcaatgcaataccacagtcagat
gaacagtacgacccgttcgccgaacaccggcccgctaagattgcagagcgtgaagacgag
tacaaggccagacgtcgacagatgatcatctctccagagcgtcttgacccctttgcagat
gggggcaaaacgccggaccctaagctgcagtccaggtcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagagaaggccaaaaca
ggagacctgaaggctgtcaatggctctgctgcctcccaggctgctgctgctgctgctgcc
gccgcaaagcgtaaacgccgttgggaccagacggccgagaaacaggaccaatcaggaacc
cccagcaacgccggcacaccgaagaagatgtccagctgggaccaggccgatcaggctgct
gagcagaccccaggacacacccctggtcacaccccctccaacagccgctgggacgagacc
cccggaaggaacaagggcagtgagaccccaggggccacccccagctcccgaatgtgggac
cccacccctagccacaccccggctggagcagccacgccaggcagaggagacacaccggga
cacaccacccctggacacgggggagccacaggcagcgtgcgcaaaaaccgatgggacgaa
acccccaagacggagagggagacccctggtcatggaagtggttgggctgagaccccccgt
acagacagaggagacgagtcagtgggagagacccccacccccggggccagtaaaaggaaa
tcccgttgggacgagacccccgccagccagatgggctcttccaccccactgatgacccct
gggaaaactcctattggaacccctgccatgaatatggccactccttctccaggtcacctg
atgagcatgaccccagagcagctgcaggcctggcgttgggagagggagatagacgagagg
aaccgacctctcacagacgatgagctggatgccatgttcccagaaggatacaaggtcctt
cccccaccagcaggctatgtgcccatccgtaccccggcccggaagctgtctgccaccccc
acccccatggggggcatgacgggcttccatatgcagcaggaggaccgctccatgaagcag
atcaacgaccagcccagtgggaacctgcccttcctcaaaccagatgacattcagtacttt
gacaaactgcttgttgaggtggatgagtccactctgagcccagaggaacagaaggaacgt
aagatcatgaaactactgctgaagatcaagaacggaacacctcccatgagaaaggctgcc
ctgcgtcagatcacagacaaggcgagggagtttggagcggggcccctgttcaaccagatc
ctgcccctgctcatgtctcctactctggaggaccaggagcgccacctgctggtcaaggtc
atagaccgcatcctctacaagctggatgacctggtccgcccatatgtacacaagatcctg
gtggtgattgagccgctgctgattgatgaagattactatgccagagtggagggcagagag
atcatctctaatttggccaaggctgccggcctggccactatgatctccacgatgagacct
gatattgacaacatggatgaatacgtcagaaatacaacagcaagagcttttgctgtcgta
gcgtccgctctgggaatcccctccctcttgcccttcctcaaagctgtgtgtaagagcaag
aagtcttggcaggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatg
ggctgtgccatcctgccccatctgaggagtttggtggagatcatcgagcatggtctggtg
gatgagcagcagaaggtgcggaccatcagtgccctggccatcgccgccctggcggaggct
gccacgccctacggtatcgagtcctttgactccgtactcaaacccctgtggaagggtatc
cgacagcacagaggaaagggtctggctgcgttcctgaaggccattggctacctgatccct
ctaatggatgctgagtacgctaactattacaccagagaggtcatgctgatcctcatcaga
gagttccagtcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgt
tgtggtactgacggtgtggaggccaactacatcaagacagagatcctgcctcccttcttc
aagcacttctggcagcacaggatggccctggacagacgcaactacagacagctggtggac
accacagtggagctggccaataaggtgggggcagcagagatcatctctcgtattgtagat
gacctgaaggacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatc
atggggaacctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggc
atcctgtatgccttccaggaacagaccactgaggactctgtaatgctgaacgggtttggc
acggtggtgaacgccctggggaagagggtgaagccctacctgcctcagatctgtggtaca
gtgctgtggcgtctcaacaacaagtctgccaaggtccgccagcaggctgctgacctcatc
tcccgcaccgctgtggtcatgaagacctgccaggaggagaagctgatgggtcacctggga
gtggtgttatatgagtatctaggagaagagtatcctgaagtactgggaagtatccttggt
gctctcaaggccatcgtcaatgtcatcggtatgcacaagatgactccaccaatcaaagac
ctgctaccgcggctgacgccaatcctgaagaacagacatgagaaggtgcaggagaactgt
attgacctggtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggagtgg
atgcgcatctgctttgagctgctggagctcctcaaggcccacaagaaggccatccgcaga
gccacagtcaacaccttcggatacatcgccaaggctattggaccccatgatgtgctggcc
acactactcaacaacctgaaggttcaggagcgtcagaaccgagtgtgtaccaccgtagcc
atcgccatcgtggctgagacctgttctcctttcaccgtgctccccgccctcatgaacgag
taccgtgtgcctgagctcaacgtgcagaacggcgtgctcaagtccctgtccttcctgttt
gagtacatcggggagatgggcaaggactacatctatgctgtcacgcccctgctggaggac
gcactgatggacagagacctggtccacagacagactgccagtgccgtggtgcagcacatg
tccctgggcgtctacggcttcggctgtgaggactcccttaaccacttgttgaactacgtg
tggcccaacgtgtttgagacgtcgccccatgtaatccaggctgtcatgggggccctggag
ggcctcagggtggctatcggcccctgccgcatgctgcagtattgcctgcagggtctcttc
cacccagccaggaaggtccgagacgtctactggaagatctataactcgatctacatcggt
tcccaggatgctctgatcgctcactacccccacgtctacaacgatgagaagaacccttac
ctccgctatgagctggagtacttcctgtga

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