Oncorhynchus gorbuscha (pink salmon): 124048589
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Entry
124048589 CDS
T07892
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124048589 (rc3h2)
04121 Ubiquitin system [BR:
ogo04121
]
124048589 (rc3h2)
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
124048589 (rc3h2)
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124048589 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
zf-C3HC4
zf-RING_10
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
124048589
NCBI-ProteinID:
XP_046225483
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All DBs
Position
LG11:complement(38014178..38067220)
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AA seq
1099 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSNGHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDLLPVNCALLQLVGAQVLESQPVTLSSAVELEHYEVCRVCVEELALYLKPISGGKGVVT
LSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSVG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANI
DHNPDAASPSWDELEGVVLAVKVMVDGLVEFTQNFSKKNHETPQPQPNSKYKTSMCRDLR
QQGGCPRGSNCTFAHTQDELEKYRMRNKKISGVGRPFPLAQGSMGSEGGDSGEEACAGGL
KGSDKVGSGSLTEGSTHPHLIPRGGNMMEEMKRERSVVNGSNGLTGSSRSSSGSLEQKTV
SPPKTPVNHSSAPSPHGPGSRVECGSGHPKQGHFLMRGPPHQPPPHQPQSSELYYQDPRP
PYDTQPYQPASNYYTSTMHHHKPCMARFLRSSHVLESSLPPSMAPPYSEQHPSFPPPRER
TGPSPYGPPPAPQYGPLAPAHGGYAPLYDSRRMWRPQLYHREDARSNSLPPEVLHSSVYQ
PPLRERYASLDSPYCSAGEHRAALHRDSYGHVTLGYEDLFKRKQEQWTHHHHGNMNRPSP
SSPVFTVDFGAEHDSGGDQCMNCKYRGEERLAHYSPWSCGTISTCISPFEPEHHNASAHS
CSEHSEVENGERKRWLHTFEPYRRLKDEDPIIPFGEGPIISKWGAISRASRTGYHTTDPV
QATACQGSNSTTPVNFRDYGPHIGHGDYRWSSCGSDSSSHSSFLESEQLGVCELSARDRS
FGSGEKDGAGGLLQTDYCKDMTESEPDRDIELELSVLDMEDIDLQDNSQQSEESLELRDP
HLLTPPSSEPQRSQTDKLPADKMEAHLMKKMAFRKSLSPGGLGSGGLSVGKLMMRTGPPR
LGDMGPRPNTGPEMLLNGS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcagcccaatggacagagttcctctcctgccccatctgctacaatgag
tttgacagcaatggccacaagcccatcagtctgggctgctcgcacaccgtgtgtaagacc
tgtctgcacaagctgcaccgcaaggcctgccccttcgaccagacagccatcagcactgac
atcgacctcctgcctgtcaactgtgccctgctacagctggtgggagctcaggtcctggag
tcccagcctgtgactctgagcagtgctgtggagttagagcactatgaggtgtgccgggtg
tgtgtggaggagctggctctctatctcaaacccatcagtggaggaaaaggtgtggtgaca
ctcagtccgagcgcgctcagtcgacccatgcagaggaagctggtgacactggtcaactgc
cagctggtggaagaggaggggcgggtacgtgcggtgcgggcgggccggtcgctaggggaa
cgtaccgtcacagagctcatcctgcagcaccagaacccacagcagctctctgccaacctg
tgggccgccgtcagggcacggggatgccagttcctggggcctgcgatgcaggaggacgct
ctaaagctggtgttgctggccctagaggacggctcagctttgtccaggaaggtactggtg
ctgtttgtggtccagaaactggaggctaggttccctcaggcctccaagacctccgtcgga
catgtggtccagctgctctacagagcctcctgctttaaggtgaccaagcgtgacgaggac
tcgtcgctgatgcagctaaaggaggagttccgtacctacgaggccctgcgccgcgagcac
gacgcccagatcgtccacatcgccatggaggcggggctccgtatctcacctgagcagtgg
tcttccctgctctacggagacctcatccacaagtcacacatgcagtctatcattgacaag
ctccagtccccagagtcctttgcaaagagtgtccaggagctgacgatagttctacagaga
acaggagaccctgccaacctgaacagcctcagaccacacctggaactactggccaacatc
gaccacaacccagacgcggcgtctccgtcgtgggacgagctggagggcgtggtgctggcg
gtgaaggtgatggtcgacggtctggtggagttcacacagaacttcagtaagaagaaccac
gagacaccacagccgcagcccaacagcaagtacaagaccagtatgtgtcgagacctccgg
cagcagggtggctgtccccgaggatccaactgcaccttcgcacacacacaggacgagcta
gagaaatacagaatgagaaacaagaagatcagtggcgtgggccggcccttccccctagcc
caggggagtatgggtagtgaggggggcgactcaggagaggaggcctgcgctgggggactg
aagggctcagacaaggtgggatcggggtccttaacagaggggtccacacacccccatctc
atccccaggggaggcaacatgatggaggagatgaagagggagaggtctgttgttaacgga
tccaacggactcacaggctccagccgctcctcatctggctccttggaacaaaagactgtt
tctcctccaaagacgcctgtcaaccactcctcagctccttctccccatggtccggggtct
agggtagagtgtggctctggtcatcccaaacaagggcacttcctaatgagaggaccccct
caccagcctcctccccaccagcctcagtcctctgaactgtactaccaggacccccgacct
ccctacgacacacaaccctaccagccagccagtaactactacacctctacaatgcaccac
cacaaaccctgcatggcccgcttcctgcgttccagccacgtcctcgagtcctctctgccg
ccttccatggcccctccgtactccgagcagcacccctcctttcccccaccacgggagcgc
acgggtccttctccctacggccccccgccggccccccagtacgggcccctggccccggcc
catggtggctacgctcccctgtatgacagtcggcgtatgtggagaccccagctgtaccac
cgtgaggacgccaggagtaactccctgcctccagaggtgctgcactcctctgtgtaccag
ccccccctccgagagagatacgcctccctggacagtccctactgctcggcgggggagcac
agagcagcgctgcacagggactcttatgggcatgttactcttggatacgaggatctgttc
aagcggaaacaggagcaatggacacaccatcaccacggcaacatgaacaggccctccccg
tcctcccccgtcttcaccgtagactttggtgcagagcatgacagtggaggggatcagtgt
atgaactgtaagtaccgtggtgaggagcgtctggcccactactctccctggtcctgtgga
accatcagtacctgcatcagcccctttgaaccagagcatcacaacgcctcagctcactcc
tgctccgaacactcagaagtagagaatggtgaaaggaaacggtggctccacacatttgag
ccgtaccgtcgtctgaaagacgaggatcccatcatcccatttggagagggacccatcatc
tcgaaatggggggctatctcccgcgcctcccgtacagggtaccacaccactgaccccgtc
caggccacagcctgccagggaagcaacagcaccacccccgtcaacttcagagattatggc
ccacacatcggtcacggtgactacaggtggagctcctgtgggtctgactcgtccagccac
tctagtttcctagagagtgagcagctgggagtgtgtgagctttctgcccgtgaccggtcc
ttcggcagtggagagaaggatggtgcaggaggcctgctgcagactgactactgtaaggac
atgacagagagcgaaccggacagagatattgagctggagctgtctgtactagacatggag
gacattgacctgcaggacaacagtcaacaatcggaggagtcccttgagctaagggacccc
cacctcctcacccctcccagcagtgaaccccagaggagccagacggacaagctgcccgct
gacaagatggaggctcacctgatgaagaagatggccttcaggaagtctctctcccctgga
ggtctgggctcgggaggcctcagtgtggggaagctgatgatgagaaccggccctccaagg
cttggggacatgggccctcgccccaacacaggccctgagatgctgctcaacggcagttga
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integrated database retrieval system
