Oncorhynchus gorbuscha (pink salmon): 124048677 Help Entry 124048677         CDS       T07892                                  Symbol col27a1a Name (RefSeq) collagen alpha-1(XXVII) chain A   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism ogo  Oncorhynchus gorbuscha (pink salmon) Pathway ogo04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ogo00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     124048677 (col27a1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ogo00536]     124048677 (col27a1a) Glycosaminoglycan binding proteins [BR:ogo00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    124048677 (col27a1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Motif Other DBs NCBI-GeneID:  124048677 NCBI-ProteinID:  XP_046225650 LinkDB All DBs Position LG11:complement(42690556..42933203) Genome browser AA seq 1747 aa AA seqDB search MNLGIRRGDCRTSHLDTKRVLLLCTVLYCTCYLGLAQVNSEDVDILQRLGLKGEKPSSSI RPGIIPFRSGVILTQQARVEAPARSVIPPSYWPNLALLLSVRSHRVNNAFLFTVLTGHRR LLLGLQLTPGQLVLHTGPKSAVPLHYDLRDGQWHHLALDIRDQRVTLYSACGKQSVHADL TSVDREGLDPESSFLLGKMGQGSVQFEGAICQFDLIPSSQAAHNYCRYIKKQCREGDTYR PNIAPLLTRDPNITASLALPAPSELNRKPMVMNLARSATAAASAVRHVVPAILLKPTPRT TPSPLPGTVMLLMTGPGQAFPTKAQSETITAPLRNGVAPPSSPKTYPITQKSHKPTHIKP ANVKPTPVKPANFKPTPPKPTPAKPILAKPTSRSSPKKTTLGLEAKQKPSFTAAAKPTKK KPDSALLAQGAVSPGPKKLLQKPQPTAPKKTIAQPKVTATRQFKATNAPANPKLSKATNA PVTQRPTRPTYAPFNFTATGWWQTYDVEPTHFSLFLPGPQGLKGEPGLAGRPGPPGKSGT PGKRGPQGGPGPHGKPGRPGPPGLKGRKGDSGLSSGTAAKGEKGDPGILGQVGLLGQAGR KGQRGHPGPPGHTGEPGERGPDGSPGAKGYPGRQGLPGPIGAIGPKGTRGFIGIAGLFGL PGADGKRGILGEPGKRGKMGRPGFPGDFGERGPPGPDGDPGLLGARGPNGVLGLIGDMGP NGKMGLPGPNGLKGVSGNPGEPGLKGDKGEIGLHGQQGMIGFQGDKGVQGTPGLPGTRGK PGLQGRPGERGSDGVPGLPGAEGFPGDMGPPGENGLEGPNGKPGVRGLPGPRGVPGLEGV EGPLGPLGLTGVEGRVGMKGFPGKIGTDGVKGELGITGKVGGLGERGLVGFIGPVGETGL AGEKGDRGEMGLPGPPGEKGSMGHQGTLGESGPSGEPGRPGPPGSRGPIGTRGPKGRWGA RGPDGPTGKLGLVGMKGPDGLPGKMGFSGDEGKIGELGEAGPQGFPGIQGPSGSLGDQGI AGEPGLPGPVGTVGPLGEIGLQGPLGKVSDPGLPGEPGEKGALGAIGNIGEQGLMGQRGE PGIEGEAGAAGPDGTKGEKGDMGHEGDKGEKGETGMKGKEGPPGNPGLIGITGQEGKSGK IGERGKPGRKGAKGHMGHLGETGRIGKTGPKGFVGPKGSRGTIGPVGPPGRMGKQGELGL AGYEGHQGPQGPIGHQGPNGEKGEQGDDGKVEGPTGPPGDRGPPGDRGERGEIGDPGYRG QQGVDGGRGKPGAPGQPGHPGPHAQHGPKGSKGDQGQKGKLGQRGESGSRGSLGVVGLHG PRGMVGREGLEGVPGVDGVSGKDGSKGMPGEHGDDGEFGLPGKAGYRGKVGGLGLPGDMG TLGPKGERGLPGQTGPSGKRGFKGGMGLPGPQGDQGPKGQPGDTGEPGFPGILGVFGPTG PPGDLGPKGIQGPKGPQGTMGRGGIMGPMGIIGPDGSPGPKGDKGSRGEMGLQGPKGLPG PPGPPGPPGVPLSFKQDSSLQVFESINTPLRTENWVVMDLPMLDHVTEIIKTLHYLSNLI QSLKNPLGTSDNPARICRDLHSCEQKMSDGTYWIDPNLGYSSDTIEVTCNFTGGGQTCLK PVTVSKLEISVGRVQMNFLHLLSSKAVQHVTIHCLNVPIWRTSEDQPPSKGSVHFRAWSG EIIEAGGAMEPHVIEDSCWMKDGRWHHTHFVFHTQDPNLLPVVNIYNLPKTTLGSHYHLE VGPVCFL NT seq 5244 nt NT seq  +upstreamnt  +downstreamnt atgaatctagggatccgaaggggagattgcagaacctctcatctcgacacaaagagagtc ctattgctctgtacagttttatattgtacttgctacctgggacttgcacaagtaaactct gaagatgtggacatcctccagaggctggggctcaagggagagaagccatcaagctccatc cgtccagggatcattccattccgatcaggagtcatcctcacccaacaggcacgtgtggag gcccctgcccgctcagtcataccaccgtcctactggcccaacctggcgctgcttctgagt gtgcgttcccaccgtgtcaacaacgccttcctcttcaccgttctcaccggccaccgccgg ctcctgctaggcctgcagctgaccccggggcagcttgtcctccacacagggcccaagagc gccgtcccactccactacgacctccgcgatggccagtggcaccatctggctctggacatc cgtgaccaaagggtgactctatactctgcctgtgggaagcagagcgttcacgcagacttg acttcagtagacagagaaggcctggaccctgagagctccttcctactcgggaagatgggc cagggctcggtgcagttcgagggtgccatttgccagtttgaccttatcccctcctcccaa gcagctcacaactactgcaggtacattaagaaacagtgcagggagggtgacacctacagg ccaaacatagcgcccctcttaacccgagaccccaacatcacggccagcctggccctgcca gctccctctgagctgaacaggaagcccatggtcatgaacctagcaaggagcgccactgca gctgcctctgctgttaggcatgtggtgccggccatcctgctaaagcccacccctaggacc actccttctcccctgcctggtactgtgatgttactcatgacagggcctgggcaagccttc ccgaccaaggcccagagcgagaccattacagcaccactcaggaatggagtcgcccctccc tcctcccccaaaacctaccccatcactcagaaatcccacaagcccactcatatcaagccc gccaatgtcaagcccacccctgttaagcctgccaatttcaagcccacccctcccaagccc acacctgccaagcccatcctagccaaacccacctctcgcagcagccccaagaagaccacc ttggggctggaggcaaagcagaaaccctctttcactgctgcggccaagcctaccaagaag aagccagactctgcccttctagcccagggggcagtcagccctgggccaaagaaactacta cagaaaccacagcctacagcacccaaaaagacaatagcccagcctaaagtcacagccact cgccaattcaaagccaccaatgcacctgccaatccaaagctctcgaaagccaccaatgca cctgtcacccaacggcccaccagacccacctatgcaccctttaacttcaccgccacgggc tggtggcagacgtacgatgtggagccgacccatttttctctatttttgccaggaccccaa gggctaaagggtgaaccaggccttgcgggccgtccaggaccaccggggaagtcaggcaca ccagggaagaggggtcctcagggtggacccggtccccatggaaaacctggccgtcctggt ccacctgggcttaaggggaggaaaggagactctggtctctcatctggaacagccgctaaa ggagagaagggagacccaggtattcttggccaagttggactactcggccaggctggtcga aagggacagagagggcatcctggtccacctggtcacacaggagagcctggggagcgaggt ccagatggaagcccaggtgccaaaggttatcctggcaggcagggtttgccaggtcccata ggagccattgggccaaaaggcactcggggcttcattggaatcgcgggcctttttggccta cctggtgctgatggcaaaagaggcattcttggggaacccgggaagaggggcaagatgggt aggccggggtttcctggagactttggtgaaagaggaccaccaggaccagatggggaccca ggtttgcttggagcccgtggtcctaatggagttcttggacttattggtgacatgggaccg aatgggaagatgggccttccaggacccaatggactgaagggggtgtccggcaacccagga gaaccaggactgaaaggtgataagggtgaaattgggcttcatggacagcagggaatgatc gggttccaaggagacaagggtgttcagggtactccaggattgccaggtaccagaggaaaa ccaggacttcagggcaggccaggagagagagggtctgatggagtacctggccttccagga gcagagggtttccctggagacatggggcctcctggagagaatggcttagaaggcccaaat ggaaagcccggagtgagggggttgcctggtcctagaggggtgcccgggctagagggagtt gagggcccacttggaccactgggtctgacaggagtggagggtagagtcggcatgaagggc ttccctggaaagattggaacggatggagtgaagggagagcttggtatcaccgggaaggtt ggaggcttgggtgaaaggggcctggttggctttattgggcctgttggagagactggattg gcaggggagaagggggatcgaggggagatgggcctgccgggacctcctggagaaaaggga tcaatgggtcaccaagggacactaggtgaaagtgggccatctggggaacctggaagaccg ggccccccaggatctcgtgggccaattggtaccagaggacccaaaggcagatggggtgcg agagggcccgacggtccaacggggaagctggggttagtgggcatgaagggccccgatggt cttccgggaaaaatgggtttttcgggagatgaggggaaaattggagagctgggagaagct ggacctcaagggtttcccggtattcaaggaccctctggatctctaggagaccaaggaata gcaggcgagccaggactccctgggccagtggggacagtggggccactaggagaaattggt ctacagggtcctctaggcaaagtgagtgatccaggactgcctggggagccaggggagaag ggagcactcggagccattggtaacatcggagagcagggactaatgggacaacggggagag ccagggattgagggagaggccggtgctgctggtcctgatggaacaaagggtgaaaagggt gacatggggcacgagggcgacaaaggagagaagggtgaaactggaatgaagggaaaggag ggcccacctgggaatcctggactcataggcatcacaggacaagagggtaaatccggcaag attggtgaaagaggcaaaccaggaagaaagggagccaaaggccatatgggtcatcttggg gagacgggacgaatcggaaagactgggccaaaagggtttgtgggaccgaagggctcgaga ggaaccattggacctgtgggtcccccaggcagaatgggtaaacagggggaactgggtcta gcaggttacgagggtcatcagggaccccaaggccctattgggcatcaaggaccaaatggt gaaaagggcgagcagggggatgatgggaaggttgagggtcctactggtcctccaggcgac agaggtcctccaggagacagaggagagagaggggagataggggatccaggataccgaggg caacaaggtgtggacggagggagaggcaaacctggagcccctggacaacctggacatcca ggacctcatgcacaacacgggcccaaaggatccaaaggagatcaaggtcagaaaggcaaa ctcggtcagagaggagaatctggaagcagaggatcgctgggtgtggttggtctccatggc ccgagaggcatggtggggcgagaggggctggagggcgtgccaggcgtagacggagtctca gggaaggatgggtccaaaggcatgccaggcgagcatggtgacgatggtgagttcggtctc cctggcaaagctggttaccgtggaaaagtcggcgggctgggactgccgggcgatatggga actttgggaccaaagggtgaaaggggcctcccaggacagacaggaccctcagggaagaga ggctttaagggtgggatgggactgccagggccacagggggaccaagggcccaaaggacaa cctggtgatacaggagaaccaggttttccagggatactgggagtgtttggaccaacaggg cctccaggtgacttgggaccaaaaggcatacagggaccaaaagggccacagggcacaatg ggcagaggtggaataatgggtccgatggggattattgggcccgatggaagtccaggccct aaaggagacaaggggagccgtggagagatgggattacaaggaccaaaggggcttccagga cccccgggacctccaggtcctcctggtgtccctctgtcatttaaacaggacagttccctt caggtgtttgagtctataaacaccccacttaggactgagaattgggtagttatggacctg cctatgctagaccatgttacagagatcattaagaccctccactaccttagtaacctgatc cagagcctgaaaaatccactgggcaccagcgataaccccgcccgcatttgcagggacctc cacagctgtgaacagaaaatgagcgatggcacttattggattgacccaaacttgggctac tcctcagatacaatagaggtcacctgtaacttcacaggtggagggcagacctgcctaaaa cctgtaacggtgtccaagctggagattagtgttgggcgtgtccagatgaacttcctgcat ctcttgagctcaaaggctgtgcaacatgtgaccatccactgcctgaacgtacctatctgg aggacctctgaggaccagcctccttcaaaggggtctgtgcatttcagggcgtggagtggg gagatcattgaggcaggaggagcgatggagcctcacgtcatcgaggactcctgttggatg aaggatggacgctggcaccacacccattttgtgttccacacccaggatcctaacctgctc cctgtggttaacatctataacttacccaagaccactctcggatcacactaccacctggag gttggccctgtgtgtttcctgtaa

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