Oncorhynchus gorbuscha (pink salmon): 124048718
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Entry
124048718 CDS
T07892
Name
(RefSeq) very low-density lipoprotein receptor-like isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124048718
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
124048718
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
EGF_CA
SGL
cEGF
Motif
Other DBs
NCBI-GeneID:
124048718
NCBI-ProteinID:
XP_046225718
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Position
LG11:44343764..44358800
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AA seq
878 aa
AA seq
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MVTSILGLLILPICLQQCGVVHGSKTECEPSQFQCGNGRCIPSVWQCDGDEDCSDGSDEH
ICVRKTCAAVDFVCRNGQCVPKRWHCDGEPDCEDGSDESVDVCHTRTCRVNEFSCGAGST
QCIPVFWKCDGEKDCDNGEDEIDCGNITCASLEFTCASGRCISRNFVCNGEDDCGDGSDE
QECAPSSCGPSEFQCGNATCIPGSWVCDDDVDCQDQSDESPQRCGRHPTPPAKCSPSETQ
CGSGECIHRKWRCDGDPDCKDGSDEANCSVRTCRPDQFKCEDGTCIHGSRQCNSLRDCAD
GTDEVNCKNLTQCNGPDRFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLLNNG
GCSHMCRDMVIGYECDCTPGLQLIDRKTCGDIDECMNPGICSQICINLKGGYKCECHNSY
QMDPTTGVCKAVGTEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQTLFW
ADLSQRAIFSTVLDKRGDVGSHVKVIDNIQTPVGIAVDWIYKNIYWSDLGTKTIAVANFI
GTKRKVLFDSGLKEPASVAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVETDIQWPN
GITLDLIKSRLYWVDSKLHMLSSVDLNGDNRRKVLQSPEYLAHPFAVTVFEDRVFWTDGE
NEAIYGANKFTGSDVITLASNLNEPQDIIVYHELIQLPGTNWCNEKAQNGGCAYMCLPAP
QINKYSPKYTCVCPKDQTLATNGLHCRPVSPSTPSKDDGKALIRPTDPQVTTVPKVVPQP
VPAEANVSTAIREVDSTARGSVAAWVILPVLFLAMAAAGGYLMWRNWQLKNKKSMNFDNP
VYLKTTEDDLNIDISRHSSNIGHTYPAISVVNTEDDLS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtctattcttggactccttatcctaccgatatgtcttcagcagtgtggtgtt
gtacacggatcgaagactgaatgtgagcccagtcagttccagtgtgggaatggccgctgc
atcccatctgtctggcagtgtgacggggatgaggactgctccgacggcagtgacgagcac
atctgtgttcgtaagacctgtgcggcggtggattttgtctgtcgcaatggccaatgcgtc
cccaagagatggcactgcgacggtgagccagactgcgaggatggctctgacgagagcgtg
gatgtttgccacaccaggacctgccgtgtgaatgagtttagctgtggtgccgggtccacc
caatgcatcccggtcttctggaagtgtgatggcgagaaggactgcgataacggcgaggat
gaaattgactgcggtaacatcacgtgcgcctcgctggagttcacctgtgcgagcggccgc
tgcatctcccgtaactttgtgtgcaacggcgaggacgactgtggcgacgggagtgacgag
caggagtgcgccccgtcgtcctgcggccccagcgagtttcagtgtggcaacgccacctgt
atccctggcagctgggtgtgtgacgacgacgtggattgccaggaccaatcggacgaatcc
cctcagcgctgtggtcgccaccccacgcccccggctaaatgttcacccagcgagactcag
tgtggctctggggagtgcatccaccgcaagtggcgctgtgacggagaccccgactgcaag
gacggcagtgacgaagcaaactgttctgttcgtacctgcaggccagaccagttcaagtgc
gaggacggcacctgtatccacggcagcagacagtgcaacagcttgcgtgattgtgcagat
ggcaccgacgaagtcaactgcaaaaacttgactcagtgcaacggccctgacaggttcaag
tgtcggagtggcgagtgtatcgagatgagcaaagtgtgcaacaaggcccgggactgtcct
gactggagcgacgagcccatcaaagagtgcaacctgaacgagtgtctgctgaacaatggc
ggctgctcccacatgtgcagggacatggtgattggctacgagtgtgactgcacccctgga
ctgcagctcatagaccgtaaaacctgtggggacatcgacgagtgtatgaatcctgggatc
tgtagtcagatctgtatcaacctgaagggagggtacaagtgcgagtgccacaacagttac
cagatggaccccaccacgggagtgtgcaaggccgtgggcacggagccctgtctgatcttc
actaaccggagggacatccggaagctgggtctggagaggagggagtacacgcagatcgtg
gagcagctgcgtaacacagtggcactggatgcagacttcacccagcagacgctcttctgg
gctgacctgagccagagggccatcttcagcacggtgttggataagcgaggagatgtagga
agtcatgtgaaggtgatagataacatccagacaccagtggggatcgcagttgactggatc
tacaagaacatctactggtcagacctcggtaccaagaccatagctgtggccaacttcatc
ggcaccaagcggaaagttctctttgacagcggtttgaaagagcctgcgtccgtcgctgtt
gatccactctctggcttcttgtactggtcagattggggtgaaccagctaagattgagaag
tctggcatgaacggggttgacaggcaggtcctggtcgagactgatattcagtggcccaat
ggaatcactctggacctgatcaagagtagactgtattgggtggactcaaagttgcacatg
ctctctagtgtcgacctgaacggagacaaccggaggaaagtgctccagtccccagaatac
ctggctcaccccttcgctgtcactgtgtttgaggatcgagtgttttggacagatggggag
aacgaggcaatctacggcgcaaacaagttcacaggctctgatgtgattaccctggcaagc
aatctgaacgagccacaggacatcattgtttaccacgagctaatccagctgcctgggacg
aactggtgcaatgagaaggctcagaatggtggctgtgcctacatgtgcctgccagctcca
cagatcaacaaatactcccccaaatacacgtgcgtgtgtccgaaagaccagacgctcgct
acaaatggccttcactgtcgaccagtgagcccttctactccctcaaaggatgatgggaaa
gctctaatacgtcccactgacccccaagtgaccacggtgccaaaagttgtcccccaacct
gtccctgctgaagccaacgtcagtacagccatccgtgaggtggactctacagctagagga
tctgtagctgcctgggttatcctccctgtgttgttcctggccatggctgctgcaggaggc
tacttgatgtggcgtaactggcagctgaagaataaaaagagcatgaactttgacaatcca
gtgtacctgaaaaccaccgaagatgacctcaacattgatatcagcaggcactcctccaat
ataggccacacctacccagcaatatcagttgtgaatacagaagatgacttgtcataa
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