Oncorhynchus gorbuscha (pink salmon): 124048767
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Entry
124048767 CDS
T07892
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124048767 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ogo04990
]
124048767 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
ogo04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
124048767 (pdlim5b)
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-GeneID:
124048767
NCBI-ProteinID:
XP_046225787
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Position
LG11:complement(46656393..46738898)
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AA seq
621 aa
AA seq
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MSSNYSVSLVGPAPWGFRLQGGKDFCLPLTISRLTDGGKAAKARMSVGDVVLSIDGIATN
SMNHLEAQNKIKACTDDLNLTLQKASSVPKADAPRNEPLEIIKPVPITYPAPPSTFTSPS
PQPSAAYNKTARPFGGGSSVGVVTSSLTAPKVASIPSASSAFTPAAPSSQQPQPPFPLGS
HSRSPAPPIAAQPSSAPPTRPSSGRSPFTTPSSSSSSSPARVTAPSSNPGAPQSSCYNTP
INLYSNANACEVAIGQRRGLLEAQGVVVDQIKDQFNGNRVEPELNHASPLSEASKKRMIE
DTEDWHPRTGTSQSRSFRILAQITGTENDQAQENSTGKKEVVEDALPSAHVTSVKTMTKV
PGASRNGVPPPTFKTPSAQVKPSWPAGGSAGFPKGGAAPSFGRVSNTAPVPKGPDRPAPQ
AHPKDQDSLVQRAEHIAAGTRTPMCGHCDKVIRGPFLVAMGMSWHPEEFNCSHCHTSLVE
SGFVEERGTVYCAHCYEEFFAPTCTSCKQKVLGEVINALKQTWHVYCFLCASCQQPIRNN
TFHMEDGLPYCERDYYQLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCSTSLEG
QAFFSKKDKALCKKHANTVKI
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagtgtctccctggttggccccgccccctggggcttcagactgcag
ggaggaaaggacttctgtctgcccctcacaatctcacggctgaccgatgggggcaaggca
gccaaagccagaatgagtgtgggagatgtagttctgtcgatcgacggcatcgccaccaac
agcatgaaccacctggaggcccagaacaagatcaaagcctgcacagacgacctcaacctc
accctgcagaaagcttccagtgttcccaaggcggatgcaccaaggaacgaaccgctggag
atcattaagcctgtgccaatcacctacccagccccgccatccacattcaccagcccctcc
cctcagcccagtgctgcctacaataagactgcccgcccctttggcgggggcagcagtgtg
ggtgtggtcacttcctccctgactgccccaaaagtggcctcaatcccttctgcatcgtct
gctttcacccccgctgccccctcctcccagcagccccagcctcccttcccactaggcagc
cactcccgctctccagccccacccatcgcagcccaacccagctcagccccacccaccaga
cccagctctggccgttcccccttcaccaccccctcctcgtcctcctcttcctccccggcc
agagtgacagccccctcctccaatcctggtgctccgcagtcctcttgctataacacgccc
atcaacctatactccaacgccaacgcctgtgaggtggccataggacagaggcggggcctg
ttggaagcccagggtgtggtagtcgaccagatcaaagaccagttcaacgggaacagagtt
gaaccagagctgaaccatgcctcaccactcagcgaggccagtaagaagcgtatgatcgag
gacacggaggactggcatcctcgcactggcacctcccagtccaggtccttcagaatcctg
gctcagatcactggcacagagaacgaccaagcccaggagaacagcactggaaagaaagaa
gttgttgaggatgccctgcccagtgctcacgtcacatcagtgaagaccatgaccaaagtc
ccaggagcctccaggaacggtgtccccccacccaccttcaagaccccctctgcccaggtc
aaaccctcctggccggctggaggttcagcaggtttccctaagggtggagcggcaccctct
tttggccgggtcagcaacactgcaccggtacccaaaggtcctgaccgccctgctccccag
gcgcaccccaaggaccaggactccctggtgcagcgggccgaacacatcgcagcaggaaca
cgcacgcccatgtgtggccactgtgacaaggtcatcagaggtccgttcctggtggccatg
ggcatgtcgtggcaccctgaggagtttaactgttcccactgccacacgtctctggtggag
tctggcttcgtggaggagaggggaacagtgtactgtgctcactgctatgaagagttcttt
gcccctacctgcaccagctgcaagcagaaggtcctgggggaagtcatcaatgccctgaag
cagacctggcatgtgtactgcttcctgtgtgcatcctgccagcagccaatcagaaacaac
accttccacatggaggacgggctgccatactgtgaaagagattattaccaactctttggt
accagttgccatggctgtgacttccccatcgaggcaggagacaagtttctggaggcgttg
ggattcacctggcatgatacctgcttcgtatgtgcagtctgcagcaccagtttggagggc
caagccttcttctctaaaaaggacaaggccctgtgcaagaaacacgccaatacagtcaag
atctga
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