Opisthocomus hoazin (hoatzin): 104327202
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Entry
104327202 CDS
T08436
Symbol
SMARCC1
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104327202 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oha03021
]
104327202 (SMARCC1)
03036 Chromosome and associated proteins [BR:
oha03036
]
104327202 (SMARCC1)
Transcription machinery [BR:
oha03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104327202 (SMARCC1)
Chromosome and associated proteins [BR:
oha03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104327202 (SMARCC1)
PBAF complex
104327202 (SMARCC1)
GBAF(ncBAF) complex
104327202 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
SWIRM-assoc_2
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
104327202
NCBI-ProteinID:
XP_009930390
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPT
IYLIPDIELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSTDDDEWLRPVMKKDKQV
LVHWGFFPDSYDTWVHANEIDAEIEDPPIPEKPWKVHAKWILDTDIFNEWMNEEDYEVDE
NRKSVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKTGKKGQAA
LYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDE
QDEETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRA
LPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLE
QWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQMLSFPEKNK
EKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVG
SRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRV
ASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEP
EKIDAAEEEKMETETDGQQSEKVENKAESEIEEGDKVQEGENERNPEKEQDSEVTADPKP
EEKEAEENKENVDASKDKENEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYA
ELRARQQMEQQHSQTPQQPPQHXPGMNPLGAPAHPGLLPHQQPPPYPMMHHQMPPPHPPQ
PGQMPGPGPMMPGQPMPGRMMPSVSANIHPAGGGPPPPGMSPMAGNLLGPRVPLAAPNGM
YLPPAQPPAPAEGVTPPPAAAPPASAAP
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaagctggaggtacattatgtcacattcttggtgctgcttacaaatataag
aatgaacagggctggcggaggtttgacctgcagaatccatcccgaatggatcgaaacgtg
gagatgttcatgaacattgagaaaacactagtgcagaacaactgtctgagcagaccgacc
atctacctcattccagatatagaactgaagttggctaataaattgaaggacattgtcaaa
cgtcaccagggaacagtaaccgaagagaagtcaaaggctacccaccacgtttatccaagt
cctacctcaacggatgatgatgaatggttgagacctgtgatgaaaaaagacaagcaggtg
ctggtacactggggcttttttccagacagctatgacacttgggttcacgccaacgaaata
gatgcagagattgaggatcctccaattcctgaaaagccatggaaggttcatgccaagtgg
attttggacacagatattttcaatgaatggatgaacgaggaggattacgaggtggatgag
aacaggaaatcggtgagctttcgacagagaatctccatgaaaaatgaagagcctgtgcgt
agtccggagaggagagacaggaaagcagcagccagtacaaggaagaggaagcattctcct
tctccaccccccactcctgtcgagtcgagaaagaagacggggaagaaggggcaagcagcc
ttgtacgggaaaaggagagggcagaaagaagaagatgagcaagaagatcttaccaaggac
atggaggaccccacaccggtacctaatatagaagaagtggtacttcccaaaaatgtgaac
ccaaagaaagacagcgaaaacacgccggtgaaaggaggaacggtcgcagacctcgatgag
caggatgaggagacagtggcaactggaggaaaggaagatgaagatccgaacaaaggcgat
caaagtcggtccattgatccaggtgaagacaacgtcacggagcaaaccaaccacatcatt
attccgagctacgcatcttggtttgactacaactgtatccatgtgattgaacgccgtgcg
cttcctgaattcttcaatggaaaaaacaagtccaagactccagaaatatacctggcttac
cgcaacttcatgattgacacctatcgcttgaaccctcaagagtacttgaccagcactgcc
tgcagaaggaatctgaccggagacgtgtgtgctgtcatgagagtacatgcttttctggag
cagtggggcctcattaactaccaagtggatccagaaagccgtcccatggcgatgggccct
ccgcccactcctcacttcaacgtgctggctgatacgccctctgggctgatgcccctccat
atccgcaccccgcaggttccagctgctcagcagatgctgagttttcctgagaaaaacaaa
gagaagcctactgatctgcagaacttcggactccgcactgacatttactccaaaaagact
ttagcaaagagtaaaggtgcaagtgctggaagagaatggacagaacaagagacactgctg
ctattagaagctctggagatgtacaaagacgactggaacaaagtctcggagcacgttggg
agccgcacccaggacgagtgcattctgcattttctgcgcctcccgatcgaagacccctac
ttggagaactcggacgcgtctctgggcccgctggcgtaccagcccgtccccttcagccag
tccggcaacccggtgatgagtaccgtcgcgtttctggcgtcggtggtggatccccgcgtg
gcgtcagccgcagcgaaggctgccttagaggagttttctcgagtcagagaggaggtgccg
ctggagcttgtcgaagctcacgtgaagaaggtgcaggaagcagcaagagcctctgggaag
gtggatccaacctatggactggagagcagctgcattgccggaacaggtccggacgagccg
gagaaaatcgatgcagctgaagaagaaaagatggaaaccgagacagatgggcagcagtct
gagaaggttgaaaacaaagcggagagtgaaattgaggaaggcgacaaagtgcaagaagga
gaaaatgagagaaatccagaaaaagagcaagacagcgaagtgacggcagaccccaagcca
gaggaaaaggaggccgaagagaacaaggagaacgttgatgcgagcaaagacaaagaaaac
gaggctgggaagaagaaagtggaacatgaaatctcggaaggaaacgtagctacagctgca
gctgctgccctggcctcagctgccaccaaagcaaagcacctagcagcagtggaagaaaga
aagatcaagtccctggtcgcccttttggtggaaacgcagatgaagaagctggagataaaa
cttcgccattttgaggagctggaaaccatcatggacagagagaaagaagcattagagcag
cagaggcaacagctgctgacggaacgccagaatttccacatggagcagctgaaatacgcg
gagttacgggctcgccagcaaatggagcagcagcacagtcagaccccgcagcagcctccc
cagcacntccccgggatgaacccccttggggcaccagcgcatccgggcttgctgcctcac
cagcagcccccgccgtacccgatgatgcaccaccagatgccaccgcctcacccgccgcag
ccaggtcagatgccggggcccggtcccatgatgcccggacagcccatgccgggccggatg
atgccaagcgtgtcggccaacatccatccggccggcggtggtccccccccgcctggcatg
tcaccgatggcaggaaatctactgggacctcgcgttcctctggcagctccgaatggcatg
tatctgcctcctgcgcagccgcctgcgccagcggaaggggtgaccccccctccggccgcg
gcccccccggcctcagccgctccctaa
DBGET
integrated database retrieval system
