Opisthocomus hoazin (hoatzin): 104327628
Help
Entry
104327628 CDS
T08436
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104327628 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oha03021
]
104327628 (PCF11)
03019 Messenger RNA biogenesis [BR:
oha03019
]
104327628 (PCF11)
Transcription machinery [BR:
oha03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104327628 (PCF11)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104327628 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
104327628
NCBI-ProteinID:
XP_009930854
LinkDB
All DBs
Position
Unknown
AA seq
1529 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESAAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHMSPTPHMTVKPPHQTVLQSEKNKPSPSPPLHDVKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKANKTTQAEKQNSTKQEKSKASEKTQKKELDQSE
AKSKSPSPLKNKLPNTKDAKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRN
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSNRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQEAVSQHSTKASPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQSEEHQAAGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCVREEARSPFSERFKRARYED
AEKAPFPESPGSRFGGIEAKPRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAG
SSSRIDGPPGQAAMRFEGPLVGAGAAQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPP
GQVGGGGPLRFEGPLGQIGGPLRFKGAAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSAGGLRFEGPHGPSAGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFD
GPLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVDHPVQGYNGPSHGM
QFQRPDLFDGSPGPNFNGPAGPGAQNFPLRGAGHYFDEKSLQGPQYGNFSNMPMGSNQVS
LMSAQAGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLS
KTDSTSAQVNETSAQPAAEEEDDDQNDDPNVPDLTNFTVEELRQRYDSVINRLYTGIQCY
SCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERA
KSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLK
NAIRVDEKIYHPSCYEDYQNTTSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVK
EEPDDTPTACAEESTPASTDIKTEPDESV
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtacctcatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactgtatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatccgctgcacctacctctgctgtgact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaaacaaaagcagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcaa
ggatcatctactatagcttcagtcccagcaccttccaagcaacacatgtctcccacacct
catatgacggttaaaccacctcatcagactgttctgcaatccgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatgtcaaaatagtaaatagggatcctcgacttaataggatg
gctcagcattcttctcatgctaaagatcaatctcataggaaagaatttccaccgaacacg
accagtcagtctgataccaaggcaaacaaaacaacacaggctgaaaaacaaaactctaca
aagcaggagaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaccagtccgaa
gcaaaatctaaatcaccatctcctttaaaaaataagctacccaatactaaagatgctaaa
acccaggaatgtgaaagcacaaaagtatctgaaattagtaagcgagatccgagactgaaa
agacaccttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagaggagaaat
acagagaaaaaagaaaaagaggaacataagacatgtgaacatagaccagtaggcagcaga
aataaagtaattaatggtgctgttcagaaacaagacacgactacagaagagtcagaaaaa
cagggtggaaaacaagggagatcaagtaataggaaacggtcacgatcacgctctcctaag
gcacggtcaccatctacacattctccaaaaagacgagagaggagatcacccaaaagacga
cttaggagtttatctcccacttcatcaactcctaaaattggaaagatacgtcagataggc
cctaagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgagatccaaggagagtgaaaaaagcccaagaggac
aggcctcaagaagcagtaagccagcattctacaaaagcttctcctgatccaaaggagaat
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagagtgaagaacaccaagcagctggtaaatcccctcaccaaagacac
cgggaaaactggcctgctggtaaaggaattttatcaccccgcgcaccaaagcagcagcac
cggttaagtgtggatgctaatttacagattcctaaagaattgacgtctgcaagcaagaga
gaattactaaagaaggccaatgaacgcttaacatctggtgaaataacacaagatgagttc
ctcatggtagctcatcagatccgacagctcttccagtatcaggaaggaaagcacagatgt
gttcgagaggaagcaagatcaccattcagtgaacgtttcaaaagagctaggtatgaagat
gcagagaaagcaccgtttccagaaagtccagggtcaagatttggaggcattgaagcaaag
ccaaggataagtgcactaatggaagacagacctctgtttgatggctcacctagacaggct
gctgcaagggttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggt
tcaagttccagaattgatgggccacctggacaggctgccatgagatttgagggccctttg
gtgggagcaggtgcagctcagtttgacggaccgctggcaggagcagggggagctggagcc
ctgagatttgatgggccaccagggcagctggcaggggcccttaggtttgaaggacctccg
ggacaggttggtggaggaggtcccctgaggtttgagggacctcttgggcagatcggtggg
cctttgcggttcaagggagctgcagggcagcctgtaggtggtcctagatttgaaggacct
ggggttggtctcaggtttgagggtccccgtggccagccttcaggtggtctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgag
gggccacatttacagccattggggcctcatggtcaaccagggggtggcctcaggtttgag
gggccacatggtcagcctatgggcccacatggaccatcagctggtgggctcaggtttgag
ggcccgcatggaccatcagctggtgggctcagattggaaggaccacatggtcagccgggt
gtaggtcctaggttgattgatggaccagtacaccagggagctggtggacttaggtttgat
ggccctctgggtcgggctggaccgagatttgatggttgtcatgcagctggatttgatggt
cagcctggacagctctctctcttgcaaagatttgatggaattcatggtcagcctggtcca
agatttgaaagggcgcctggccaacaggcacaaccacgatttgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccccttggccttcaaggg
gcacgtttcgaaaatgtagctaaccatcctgcctcaagactagaaatgtcaccgtacgga
caaggtggtccgtttgtcgaccatcccgtccaaggctacaacggaccatctcatgggatg
cagttccagaggcctgatctatttgatggttcacctggaccgaatttcaatgggccagct
ggcccaggagcacagaatttcccgttgagaggagccggacattactttgatgaaaaaagt
cttcagggccctcagtatgggaacttcagtaatatgccaatgggaagtaatcaggtttct
ctcatgtctgctcaagcagggccttatggccaaggtcagcagtatttgccaaatcctgga
agttttgttcagaaccctgcaggagcccttccacattcatatcctgataaccaccttgga
cagcttgatgtcaatgaattgtttgctaaactgctgtcaacagggatcctcaaactgtca
aaaactgattccacttcagcacaagtgaatgaaacatcagcccagccagctgctgaagag
gaagatgatgaccagaatgatgatccgaatgttccagacctcactaacttcacagttgaa
gaacttagacagcgttatgatagtgttataaatcgactgtacactggaattcaatgttat
tcttgtggaatgaggttcactacttcacagacagatgtttatgcagatcatttagattgg
cattatcgtcagaaccggacagagaaagatgttagcagaaaaattacacacagaagatgg
tactacagtttaacagactggattgaatttgaagaaatagccgatctggaggagcgtgca
aaaagccaattctttgaaaaagctcatgaagaggtggtgttgaagacacaggaagctgcg
aaagagaaggagtttcagagtgtccctgctgggccagctggagcagttgagagctgtgaa
atttgccaagagcaatttgaacagtactgggatgaggaagaggaggagtggcatctgaag
aatgctatcagagtagatgaaaagatttaccatccatcttgctacgaagattaccaaaac
acaacatcatttgattgcacaccatctcccagcaagactcctgtagaaaatccactaaat
ataatgttgaacattgttaaacaagagacacaagagtcctgtgactcacctaaagtcaag
gaagaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctacagac
ataaaaacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
