Opisthocomus hoazin (hoatzin): 104327805
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Entry
104327805 CDS
T08436
Symbol
BARD1
Name
(RefSeq) LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104327805 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104327805 (BARD1)
04121 Ubiquitin system [BR:
oha04121
]
104327805 (BARD1)
03036 Chromosome and associated proteins [BR:
oha03036
]
104327805 (BARD1)
03400 DNA repair and recombination proteins [BR:
oha03400
]
104327805 (BARD1)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104327805 (BARD1)
Ubiquitin system [BR:
oha04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
104327805 (BARD1)
Chromosome and associated proteins [BR:
oha03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104327805 (BARD1)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104327805 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
Ank_4
Ank_2
Ank_3
Ank_5
zf-RING_6
BRCT
BRCT_2
ANK_LRRK2
Ank_KRIT1
NIBRIN_BRCT_II
Motif
Other DBs
NCBI-GeneID:
104327805
NCBI-ProteinID:
XP_009931054
LinkDB
All DBs
Position
Unknown
AA seq
867 aa
AA seq
DB search
MGTSPSTPLPPVLHGQDHLQSTGCCLTLRTLHTPPQFPSSWVKTKSYHEDRGEDGVCWDQ
TVITLYGDGGGCVCGGTTLETATCEKHEIGLSPEVLLDAQAKEKTTFETRNMGDLRPTFL
EKEIWSVLIFAPSDLSMSSRICQSQELSCVGDCVGTECPVCHVPAWVQDAQINRQLDSMI
QLCSKLQHLLGADTSDSTDVSTPTDSDFGKKDKKGQIKMWFSPRSRKIRCVLNKSQPETK
SDDCCPDTSSIYDFFPSPPHEKPSNPTKKPTQRQSKKMKKKHLVDINKAWSLEKPEQKGG
AEEKTPKEKRVTICSQPVVLCTPELNSPEETLXQESVKEAPPNKNTENVNILPQVKSSEK
KDNREVACPAQVSKENNCATETSLLIENETTPLKHGREQSRLPVTSQSKRPRRTERSITG
TPGRQADCLEELPQHCPISPAAEHKTPVQSSSAVSKLAGTAMKTRSSAVLQTVNSPLLSK
APSTPSTSKTCNQVGIPHSPSVLKSPGGNTIAKRNYKGETLLHVASIKGDVAAVEQLLKN
GADPNIKDHAGWTPLHEACNHGHKEVVELLLQYKALVNTTGYQNDSPLHDAAKNGHVSIV
ELLLLHGASRDAINIFGLRPVDYAESEKMKSVLMLPVKNESFSFSQPSEALSPSQQRDGP
LGILGSSLSSEQQKLLNKLATVLKARRCTEFNSRVTHLVIPDVPMPSTVKCMMAVLTGCW
VLKFEWVQACLRTTVREQEEKYEIQGGPQRGRLNREQLLPKLFDGCYFYFLGSFKCHQKS
DLMELVKAAGGQILVRQPKPDSDVTQTINTVAYHAEPTSDQRFCTQYVIYDASSKFKPEK
IRQGKVWMAPSSWLMDCVMSFQLLPVK
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggggacgtcgccatccaccccgctccctccagttctgcacggacaggatcacctgcaa
agcacgggctgctgtttgacccttcggaccctccacacacctccgcagtttccttcctcg
tgggtgaagaccaagagctatcatgaagacagaggtgaagatggtgtttgctgggatcaa
acagtaattacgctgtatggggatggcgggggctgtgtctgtggaggtaccaccttggaa
acagcaacctgtgaaaagcacgagattgggctgagccctgaggtgctactggacgcacag
gctaaggagaaaaccacctttgaaacccgaaacatgggagacctgaggccaactttccta
gagaaggagatctggtcggttcttatctttgctccaagtgatttgtcaatgtcatctaga
atatgtcagagccaagaattatcttgtgtgggtgactgtgttggcacagaatgcccagtg
tgccacgtgccagcctgggtgcaagacgcacagataaaccggcaactagatagcatgatt
cagctttgcagcaaactgcagcatctgctgggtgcagacacctcagattcaacagatgtg
tccacaccaactgactcggactttggaaaaaaggataagaagggacagataaaaatgtgg
ttcagcccaagaagtaggaagattcgatgcgtcctgaacaagagtcagcctgagactaaa
agcgatgactgttgtccagacacatcttcaatttacgatttttttccttcccctcctcat
gaaaagccctccaaccctacgaaaaagccaacacagagacagagtaagaagatgaagaag
aaacatctagtagacattaacaaagcatggagcttagagaagcctgagcagaaaggagga
gctgaggagaaaactcccaaggaaaagcgtgtgaccatctgcagtcaaccagtagtccta
tgcactccagaactaaatagccctgaagagacactttagcaggagtctgtaaaggaagct
ccccccaacaaaaatacagaaaacgtgaatatactgccgcaggtaaaatcctcagagaag
aaagataaccgtgaggttgcatgccctgcacaagtcagcaaggaaaacaattgtgctaca
gagacatccctgttaatagaaaatgaaactacacctttaaaacatggaagagagcaatct
agacttccagttacttctcagtctaaaagaccaagaaggactgagaggagcattactggg
acaccaggcaggcaggcagattgcttagaggagttacctcagcattgccccatctcccca
gcagctgagcacaagacaccagttcagagttcttccgctgtttcgaaactcgctggcacc
gcaatgaagacaagaagctctgcagtcttgcaaacagtaaatagccctttgctttcaaaa
gctccctctaccccatctacttctaagacttgtaatcaagtaggaataccacacagtcct
tctgtgttgaagtctcctggtggtaacacaattgccaaaagaaattacaaaggagagact
ttgctccatgttgcttccatcaagggtgacgtagcagctgttgaacagctgctgaaaaat
ggggcagatcccaatattaaagatcatgctggctggacaccgttgcatgaggcatgtaat
catgggcacaaagaagtggtggagctgttgctacaatacaaagcgttagtgaatactacg
ggatatcagaacgactcgccgcttcatgatgctgccaagaatgggcatgtgagcattgtt
gagctgctgcttttgcatggtgcctcccgtgatgcaattaatatatttggtctgcggcct
gtggactatgcggaaagtgaaaagatgaagtctgtgctaatgttaccagtgaagaatgaa
tcattttcatttagccaaccctctgaggcactgagccccagccagcaaagagatggacct
cttggtatactggggagcagtcttagttcggagcagcagaaactgctgaacaaactagca
acagttctgaaggctcgaaggtgtactgaatttaacagcagagtaactcatcttgttatc
cctgatgttccgatgcctagtactgtcaaatgtatgatggcagttctgactggatgttgg
gtcctcaagtttgaatgggtacaagcctgtttacgaaccacagtacgagaacaagaagag
aagtatgaaatccaaggtggcccacaaagaggccggctcaacagagaacagctgttgcct
aagttgtttgatggatgctacttctattttttgggatctttcaaatgtcaccagaagagt
gatcttatggagttggtcaaagcagcaggaggacaaattctggttaggcagccaaaacca
gacagtgatgtgacgcagacaatcaacacggtggcttaccatgcagaacctacttctgac
cagagattttgcactcagtatgtaatctatgacgcgtcttctaaattcaagccggagaaa
attcgtcagggcaaagtctggatggccccttccagctggcttatggactgtgtgatgtca
tttcagctcctgcctgtaaaatga
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