Opisthocomus hoazin (hoatzin): 104328563
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Entry
104328563 CDS
T08436
Symbol
DDB1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03420
Nucleotide excision repair
oha04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104328563 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
104328563 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oha04121
]
104328563 (DDB1)
03400 DNA repair and recombination proteins [BR:
oha03400
]
104328563 (DDB1)
Ubiquitin system [BR:
oha04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
104328563 (DDB1)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
104328563 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
104328563 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
104328563
NCBI-ProteinID:
XP_009931891
LinkDB
All DBs
Position
Unknown
AA seq
1046 aa
AA seq
DB search
LSQGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGIIGIIDPE
CRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQG
RHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLA
IAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE
TSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDL
ERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRETDNTLVL
SFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV
SEWREPNXKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVACLDITPLG
DTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALG
DGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLV
FSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQ
EVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHETSFGEEVE
VHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR
IVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHYN
NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG
AENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGETSTPTQGS
VLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATG
FIDGDLIESFLDISRPKMQEVVANLQ
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
ctttcgcagggggagagcaaggatttgttgttcatcctgacggccaaatacaacgcctgc
atcctggagtacaagcagaacggggacagcatcgacattatcacccgtgcccacggcaac
gtgcaggaccgcatcggccgtccctcagagaccggcatcattggcatcattgacccagag
tgccggatgatcggcctgcggctctacgacggcctcttcaaggtcattcccctggaccgg
gagaacaaggagttaaaggctttcaacatccgcctggaagagctccaggtcatcgatgtg
aagtttctctacggctgtcaggctcccaccatctgcttcgtctaccaggaccctcagggt
cgccacgtcaagacgtacgaggtgtccctgcgtgagaaggagtttaacaaaggtccctgg
aaacaggagaacgtagaggctgaagcctccatggtcatcgcagtgccagagccttttgga
ggagcgatcatcattgggcaggagtccatcacctatcacaacggagataaatacctagct
atagctccgcctatcatcaagcaaagcacgattgtgtgccacaaccgcgtggatcccaac
gggtcccgttacctcctgggggacatggagggacgcctcttcatgctgctgctggagaag
gaggagcagatggacggcactgtcaccttgaaggacctgcgcgtggaactgctcggtgag
acgtccatcgcagagtgcttgacctacctggacaacggagttgtgtttgtgggttctcgg
ctgggggactcccagcttgtgaagctcaacgtggacagcaacgagcagggctcctatgtc
gtggctatggagaccttcaccaacctcggtcccattgtcgacatgtgtgtggtggacctg
gaaagacaaggccaagggcagctggtcacgtgctcgggtgcgtttaaagagggctcactg
cggatcatccggaacggcattgggattcatgagcacgccagcattgacttgccggggatt
aaaggcttgtggcccctgaggtcggattctcatcgtgaaacagacaacacgttggtgctg
tccttcgttggccagaccagggtccttatgctaaatggagaggaagtagaagagacggag
ctcacggggtttgtggacgatcagcagactttcttctgcggcaatgtggcacatcagcag
ttgatccagatcacctctgcctctgtgagactggttagtcaggagcccaaagccctggtg
agcgagtggagggagcctaactgaaagaacatcagcgtggcttcctgtaacagtaaccag
gtagtggtggctgtgggacgagccctctactacctggagatccgaccccaggagctcagg
cagatcagctgcacagaaatggagcacgaagttgcctgcctggacatcacccctttgggg
gacaccaacggcatgtccccactgtgcgcgatcgggctctggactgacatctccgcccgc
atcctgaagctgccttcgtttgagctgctgcacaaagagatgctgggaggagaaattatc
cctcgctccatcctgatgacgaccttcgagagcagccattaccttctgtgtgccctgggg
gacggagctctcttctactttgggctcagcctcgagacaggcttgctgagcgaccgcaag
aaggtgacccttggaacccagcccaccgtcctgaggactttccgctctctgtccaccacc
aacgtgtttgcctgctctgaccgccccaccgtcatctacagcagtaaccacaagctggtc
ttctccaacgttaacctgaaagaggtgaactacatgtgtcccctcaactcggatggctat
cctgacagcttggcactggccaacaacagcaccctgaccatcggcaccattgacgagatc
cagaagctgcacatccgcacggttccgctctacgaatcgcccaggaagatctgctaccaa
gaggtatcgcagtgtttcggcgtgctctcgagtcgtatcgaggtgcaggatgccagcggg
ggcaccactgctctcagacccagcgccagcacccaggccctctccagcagcgtgagcacc
agcaagctgttctccagcagcacggcaccgcacgagacgtccttcggagaggaggtggag
gtgcacaacctgctgatcatagaccagcacaccttcgaagtgcttcacgctcaccagttt
ctgcaaaacgagtacgccctcagcctggtctcctgcaagctgggcaaggatccgaacacc
tacttcatcgtgggcactgccatggtgtatcccgaggaggcagagcccaaacaaggccgc
atcgttgtcttccactactcggacgggaagctgcagagcctggccgagaaggaggtcaag
ggggctgtgtattccatggtggagttcaacgggaagctgttagccagcatcaacagcacg
gtgcgcctgtacgagtggacggcagagaaggagctgcgcacggagtgcaaccattacaac
aacatcatggcgctctacctgaagaccaagggagacttcatcctggtgggagacctgatg
cgctccgtcctcctcctcgcctacaagcccatggaaggaaacttcgaggagattgcccgg
gacttcaatccaaactggatgagcgccgtggaaatcctggacgacgacaacttcttggga
gcggagaacgctttcaacttgttcgtgtgccagaaggacagtgcagccacgaccgacgag
gagcgccagcacttgcaggaggtggggctgtcccacctgggagagttcgtcaacgtcttc
tgtcacggctctctggtcatgcagaacctgggcgagacgtccacgccgacgcagggctcg
gtgctcttcggcacggtaaacggcatgatcggactggtgacctcgctgtcagagagctgg
tacaacctcctcctagacatgcagaacaggctgaataaagtcatcaagagcgtgggcaag
atcgagcactccttctggagatcgtttcacaccgagcgcaagacggagccggctacgggg
ttcattgacggggacctgatcgaaagcttcctggacatcagcaggcccaagatgcaggag
gtggtggcaaacttgcag
DBGET
integrated database retrieval system
