Opisthocomus hoazin (hoatzin): 104328822
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Entry
104328822 CDS
T08436
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03015
mRNA surveillance pathway
oha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104328822 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
104328822 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104328822 (PABPC1L)
03041 Spliceosome [BR:
oha03041
]
104328822 (PABPC1L)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104328822 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
104328822 (PABPC1L)
Spliceosome [BR:
oha03041
]
Complex C
Other components
Complex C specific factors
104328822 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_RdRP1_2
RRM_3
ATP-grasp_2
DUF6262
Motif
Other DBs
NCBI-GeneID:
104328822
NCBI-ProteinID:
XP_009932186
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAAARAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGARAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRLADVGRAQKRLXXQSELKREFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPPPGYFLPPIPQVSPRSQM
AASPYPAATPVLRAAVPPRRLLSNISTMRQASTQVPRVHPQAQRVANIGTQTVSSRVPSS
PSLPRGAPQYKYSSAVRNIPPLLCLPFFFLQVAEPAVHVQGQEPLTASMLAAAPPQEQKQ
MIGERLYPLIHAMHPSLAGKITGMLLEIDNSELLLLLESPDSLRCKIEEAVAVLQAHQAT
ESSHKSSAVAFLQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggccctggctatccgttagcctctctctacgtgggggacctccacccg
gacgtgaccgaagccatgctctatgagaagttctcgcctgctgggcccatcatgtccatc
cgagtctgtcgggatgttgccacgcgccgatcgctgggctacgcctacataaacttccag
cagcccgtggatgctgagcgagccctggacaccatgaacttcgaagtgatcaaaggccgt
cccatccgcatcatgtggtcccagcgcgaccccgggctccgcaagtcaggggttggaaac
gtcttcatcaagaacctggatgactccattgataacaaagccctgtacgacacgttctct
gccttcggaaacatcctgtcctgcaaggtggtttgtgatgaaaatggatcccgtggctat
ggctttgttcactttgagactcacgaggcagcagcgcgggccatcgagaccatgaacggg
atgttgctcaacgaccggaaggtgtttgttgggcacttcaagtcccgcaaagagcgcgag
gccgagtttggggctcgggcaatggagttcaccaacgtctacatcaaaaactttggggat
gacatggatgacgacagactgcgggaaatattctccaagtttgggaaaacgctcagtgtc
aaagtcatgatggacagcactggccgctcgaagggctttgggtttgtcaactttgagaag
catgaagaagcccagaaggcggtggccgacatgaacgggaaggagatcaacgggcggctg
gcggacgtgggccgggcccagaagcggctnnnnnnccagagcgagctgaagcgggagttc
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtatgtgaagaac
ctggatgatgggatagatgacgagaggctgcggaaggagttctctccctacggcaccatc
accagcgccaaggtgatgacagagggtggccacagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacggagatgaacgggcggatcgtcagcacc
aagcctctctacgtcgcgctcgctcaaaggaaagaagagcggaaagcaatcctcaccaac
cagtacatgcagagattagccaccatgagggccctgcctggccctctcctgggctccttc
cagccccccccggggtacttcctcccccccatccctcaggtgagtccccgctcgcagatg
gcagcctccccgtaccctgcagctacccctgtgctgagggccgccgtgccgccccggcgc
ctgctctccaacatcagcaccatgagacaggcctccacgcaggtgccccgcgtgcacccc
caggcccagagagtggccaacatcgggacgcagacggtcagcagccgggtgccctcctcg
cccagcctgccgcggggtgccccgcagtacaagtactcctcggccgtcaggaacataccg
cctcttctgtgtttgcctttttttttcctccaggtagcagaaccggctgtgcacgtccag
ggacaggagccgctgacggcatccatgcttgcagcagcccctcctcaggaacagaagcaa
atgataggtgagcgcctctaccctctgatccatgcgatgcatccttcgctggccggcaag
atcaccggcatgctgctggagatagacaactccgagctgctgctgctcctggagtccccc
gactccctgcgctgcaagatcgaggaagcggtcgctgttctccaagcgcaccaggctacc
gagtcctcgcacaagagcagcgccgtggcgttcctgcagtga
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