Opisthocomus hoazin (hoatzin): 104330355
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Entry
104330355 CDS
T08436
Symbol
RFC1
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03030
DNA replication
oha03410
Base excision repair
oha03420
Nucleotide excision repair
oha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104330355 (RFC1)
03410 Base excision repair
104330355 (RFC1)
03420 Nucleotide excision repair
104330355 (RFC1)
03430 Mismatch repair
104330355 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oha03032
]
104330355 (RFC1)
03400 DNA repair and recombination proteins [BR:
oha03400
]
104330355 (RFC1)
DNA replication proteins [BR:
oha03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104330355 (RFC1)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104330355 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
Rad17
AAA_22
AAA_30
BRCT_2
AAA_5
RuvB_N
AAA_17
RNA_helicase
AAA_16
AAA_7
AAA_33
nSTAND3
AAA_18
TIP49
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
104330355
NCBI-ProteinID:
XP_009933859
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MAATPGEENKSYLYLKIYKSDFSSYXDIRKFFGVVPPGKRQESDTVKKSEKIRNGEGPSS
GKKKAKETKVNNSPSEDDPRQKRTNRKRRIIYDSDSEEEVQSVKKSKKPSEKKAATSKLG
KVLKRDPVVYISETDEEDDFVNKRISLKPKENGTSAVGCLGTTTVKKEDANSRAKSKPLS
PVKQTSKTPTSALDYFGISSVQRSEKKLVASKRKEPSQSRDSMLDDEAIARQLQLDEDSE
LERQLHEDEEFAKTLAMLDEIPQKKKARKDSGGEQTVLSIKSSPNGTERYKQSEGATNST
SEAKNYTAKQQTKSQHSKGPRLSPQSSVGKRTAESDKTSPLKPSSKLVSLKQKEEIAEKE
RGAQSSASKQKTASGKGEKTTPKKEKISPKKTESISPEDSEKKRINYQAYRSFLNREGPK
ALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGR
DCGQSKCEKASTLGTKVIDEDGLFDLIRTMPGKKSKYELAAETEAKKAESRPKKTPQKAE
AGKRNFSPFKKEADNKKHKSTPEKGDTVKSVMKETTAVRKLMDFKRQTAEKEAPKPKGSL
VSEITEDGTEKLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKDTSEDGQAKTNK
TGGKDDGTSFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDTRSKNSLKEVVTESL
DNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDR
NHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVL
HNLNMWCAKDKSLTYDEAKTDASRAKKDIRLGPFDVVRKVFATGEEASRMSLIDKSDLFF
HDYSLAPLFVQENYVHMKPAAAGGNLKKHLVLLSRAADSICDGDIVDKQIRSKQNWNLLP
TQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSAGKHDRIIQELAMHMSLRTQTCKRTVN
MEYLSYLRDALVQPLKDFGADGVQEAITFMDSYCLMKEDIENIMEISMWGGKPSPFSKLD
PKVKAAFTRAYNKEAHLTPYSLNSVKTSKRQSGSAATLGLNENLTVEEIQSDEDEQDTVE
SDAMIKQKKVKSSKLPKREKNEEITKKEGKRKEKTRH
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacccctggagaagagaataagagctatctgtatttaaaaatttataaatct
gatttttcctcttactaggatatccggaaattctttggcgttgtacctcctggaaagcga
caagaaagtgacactgtgaaaaagagtgaaaaaattagaaatggtgaaggaccttcaagt
gggaagaaaaaggcaaaggagactaaggtgaataattcacccagtgaagatgatcccaga
caaaagcggacaaacaggaaaagaagaataatctatgattcagattcagaagaggaggtg
cagtcagtgaaaaaatccaagaagccatctgagaaaaaagcagctacttcaaaacttggt
aaagttctgaagcgagatcctgttgtttatatttcagagacagatgaagaagatgacttt
gtcaataaaagaatttccctgaaaccgaaggagaatgggacatcagcggttggttgtcta
ggaacaactacagtgaaaaaggaagatgcaaactcacgagctaaaagcaaaccattatct
ccagtgaaacagacttccaagactcccacctcggcacttgattactttgggataagtagc
gtccaacgatcagaaaagaaactggtagcaagtaaaaggaaagaaccttcacaaagcaga
gacagcatgctagatgatgaggccattgctaggcaactgcagcttgacgaagactcggag
ctggagagacagctgcatgaagatgaagaatttgctaaaactttggccatgttggatgaa
ataccgcagaagaaaaaggctcggaaagattcaggaggagaacaaacagtattgagcatc
aagagcagtcctaacgggacagaaagatataaacagtcagaaggagcaacaaactccaca
agtgaagcaaagaattacactgcgaagcagcaaacaaaatctcaacattcaaaaggccct
cgcttatccccacaatcatctgttggtaaaagaacagcagagtcggataagacctcgcct
ttgaagcctagctctaagcttgtgtctctgaaacaaaaagaagagattgctgaaaaggaa
agaggtgctcaaagttcagcatcgaaacaaaaaactgcttcagggaaaggagagaagacc
acaccaaagaaggagaaaatttctcctaagaagactgagtctataagtcctgaggactca
gaaaagaagcgaatcaattatcaggcctaccgaagcttccttaatcgcgaaggtccgaaa
gcactgggttccaaagagatacctcagggagctgaaaactgcttggaaggcctgacattc
gtaattacaggcgttctggagtgtattgaaagagatgaggccaagtctctgattgaacgt
tacggaggaaaagtaactggcaacgtcagcaagaagacaaactatctggttatggggcga
gactgcggccagtcgaagtgtgaaaaggcatcaactttagggacaaaagttattgatgag
gatggcctgtttgatcttattcgaactatgccaggcaaaaagtccaaatacgagctggcg
gctgaaacagaggcaaagaaagcagagtcaagacctaaaaagacgccacagaaagctgaa
gctggaaaaagaaattttagccccttcaaaaaggaagctgataataaaaaacataagtct
actcctgaaaaaggagataccgtcaaatctgtcatgaaagaaaccactgctgttcgaaag
cttatggactttaaaaggcaaactgcagagaaggaagccccaaagcctaaagggagcttg
gtttctgagattactgaagatggaacagagaaattgctgtgggtcgataaatacaagcct
gtgtctcttaaggcaataattggacagcagggtgagcaaagctgtgccaataaactgctt
cggtggctccgcaactggcacaaggatacctcagaagatggacaagcaaagaccaataaa
actggaggcaaagatgatggtactagttttaaagcagcattactttccggtccccctgga
gttggtaaaactaccacagctgctttggtttgtaaggagctggggtatagctacgtggag
ctgaatgccagtgacactcgcagtaagaacagtctaaaggaagtagtcactgaatcgctt
gacaacaccagtatcaaagacttctgttccggcacatcctcatcagttagcgggaaacat
gtattgatcatggatgaagtggatggtatggcaggcaatgaagacagaggagggattcag
gagttgattggtttgatcagacacacaaagatacccatcatctgcatgtgtaatgaccgc
aaccatcctaaaattcgttccttggtccactactgttttgatcttcgttttcagagacct
cgtctggaacagattaagggtgccatgatgtctattgcatttaaagagggtttaaaaatc
ccaccacctgctatgcaagagataatcctggcagcaaatcaggacatcagacaggtttta
cataatcttaatatgtggtgtgcaaaagacaagtcactgacttatgatgaggctaaaaca
gatgccagcagagccaagaaggacatcagactgggcccttttgatgttgtccggaaggtt
tttgctactggagaggaggcttctcgcatgtctctcatagacaaatcggatcttttcttc
catgactattccctagcccctctcttcgtccaagagaactatgtacacatgaaaccagcc
gctgctggaggaaatcttaaaaagcacttggttctcttgagcagagcagctgatagtata
tgtgatggtgatatagtggacaaacaaattcgtagcaagcaaaactggaatctccttcca
acacaggctatttatgcaagcgttcttccaggggagctgatgagaggttacatgtcccag
tttccggtctttcccagctggctggggaaattttcatctgcgggcaaacacgatcgtatc
attcaggaactggcaatgcacatgagtctcaggacccagacatgcaagaggacagtaaat
atggagtatttgtcgtatttgcgggatgcgcttgtccagcccttgaaagactttggagca
gacggtgtacaagaagctataacattcatggactcttactgcttgatgaaggaagatatt
gaaaacatcatggaaataagcatgtggggaggcaaacccagtcctttctcaaagctggat
cccaaggtcaaagcagcttttacacgtgcctacaacaaagaggcgcatctgactccatat
tcgcttaactccgtcaagacatctaaaaggcagtcgggatctgcggcgaccttaggactg
aatgaaaacttgactgtggaagaaatccagtctgatgaggatgagcaggacactgttgaa
agtgatgcaatgattaagcaaaaaaaggtgaagtcttccaagctgccaaaaagagagaaa
aatgaagaaataacaaaaaaagaagggaaaagaaaagagaaaacaagacattaa
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integrated database retrieval system
