Opisthocomus hoazin (hoatzin): 104330819
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Entry
104330819 CDS
T08436
Symbol
ARID1B
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104330819 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oha03000
]
104330819 (ARID1B)
03021 Transcription machinery [BR:
oha03021
]
104330819 (ARID1B)
03036 Chromosome and associated proteins [BR:
oha03036
]
104330819 (ARID1B)
Transcription factors [BR:
oha03000
]
Eukaryotic type
Helix-turn-helix
ARID
104330819 (ARID1B)
Transcription machinery [BR:
oha03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104330819 (ARID1B)
Chromosome and associated proteins [BR:
oha03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104330819 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
104330819
NCBI-ProteinID:
XP_009934369
LinkDB
All DBs
Position
Unknown
AA seq
1813 aa
AA seq
DB search
MDPMVMKRPQLYGMGNNPHSQTPQSSPYPGQSYGPPGPQRYPVGMQGRAPAAMGGMQYPQ
QQIPPQYGQQGVSGXHPQGHKPPHNXLAQYLSQAQQRYQAQQDMSQEGYGTRSQPPMAPG
KPNHEDLNLIQQERPSSLPVEVLASEDATFGHKDLSGSIDDLPTGTEATLSSAVSASGST
SSQGEQSNPAQSPFSPHASPHLSGIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPP
QPPGSQAESSSHPALSQSPMPQDRGFMAGIQRNPQMSQYGPQQTGPSMSPHPSPGGQVHP
GIGSFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPNTSYSGPGPGMGINANSQMHGQG
PSQPCGTMPLGRMPSAGMQSRPFPGNMSSMTPNSPGMSQQGGPGMGPPMPTVNRKAQEAA
AAVMQAAANSAQSRQGNFPAMNQSGIMGSSSPYTQPMNNSSGLMNPQAPPYSMTPNMVNS
STAPMGLADMMTPGESKLPLPLKADGKEEGPAQPESKSKDSYSSQGISQPPTPGNLPVPS
PMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKMWV
DRYLTFMEERGTPVASLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATTLNVGT
SSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKIQPPSPANSGSLQGPQ
TPQSTGSNSMTEVPGDLKPPTPASTPHGQMTPMQGGRNSAVSVHDPFSDVSDSAFPKRNS
MTPNAPYQQGINMPDMMGRMPYEPNKDPFGGMRKVPGSNEPFMTPGQMPNSGIQDMYNQS
PSGAMSNMSMSQRQQFSYGSGYDRRSDHGLGPEGSMGPPGQSNMVPSNSDPSMYSPNHYP
GQQRHEPYGQQYPGQGPPSGQPPYGGHQPGMYPQQQNYKRHMDGMYGPPAKRHEGDMYNM
QYGNQQQEMYNQYSNAYTGPDRRPMQGQYPYPYNRERMQGPGQMQQHGIPPQMIGGPMQS
SSSSEGPQQNMWPTRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQRINHESQWP
SHVNQRQPSYMSSSASMQPITRPPQSSYQTPPSMPNHISRAPSPASFQRSLENRMSPSKS
PFLPSMKMQKVIPTVPVSQVAGPPPQPPPIRREITFPPGSVEASQPVLKPRRKITSKDIV
TPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLI
DIFGILMEYEVGDPGHKALDHKAAKKDDSQSLAEDTGKEENDECIDCFDEEEEEGDDEKV
EGEEKSIVFSTPGAIADPSERPKQASKFDKLPIKIVKKNNLFVVDRSDKLGRVQEFDSGL
LHWQLGGGDTTEHIQTHFESKMEIPPRRKAPPPLNSPSKKKGLEGKGESEEQQDKSITAT
IDDVLSARPGALPEDSNSGSQTESSKFPFGIHQAKSHRNIKLLEDEPRSRDETPLCTITH
WQDSLAKRCICVSNIVRSLSFVPGNDTEMSKHPGLVLILGKLILLHHEHPERKRAPQTYE
KEEEEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWM
VCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKLYATLV
RYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQ
HNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVA
SVICDVLFQIGQL
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggatccaatggtcatgaagagacctcagttgtacggcatgggcaataaccctcactct
cagacgccgcagagcagcccctaccccgggcagtcctacggccctcccggcccccagcgc
tatcctgtgggaatgcagggccgagcccccgccgccatgggaggaatgcagtatccacag
cagcagatcccgcctcagtatggccagcaaggtgtcagtggctaacacccgcaggggcac
aaacccccccacaatnntttggcgcagtacctgtcgcaggcgcagcagaggtaccaggcc
cagcaggacatgtctcaggaaggctatggaaccagatctcaaccccctatggccccaggg
aagcctaaccatgaagacttgaatctaattcagcaagaaagaccatcgagcttaccagtt
gaagtcttggcctccgaggatgctacatttggacacaaggatttatccggatccattgat
gacttgccaactggaaccgaagcgaccctgagctcagccgtcagcgcgtcgggctcgacg
agcagccaaggggagcagagcaaccctgcacagtctccgttctcccctcatgcgtctcca
catctctctggcatccccgggggcccatcgccttcccccgtaggctctcctgttggaagc
aaccagtcgagatctggtcccatttctccagcgagtattccaggcagtcagatgccaccg
cagcctcctggcagccaggcagaatccagctcccaccctgccctgagccagtcaccaatg
ccacaggaccgaggttttatggcaggcatacagaggaacccccaaatgtcccagtatgga
cctcagcaaactggaccttccatgtcaccacacccctcacctggaggccaggtgcatccc
ggaatcggtagctttcagcagagtaattcaagtggtacttatgggcctcagatgagccag
tatggaccacaaggaaactactccagaccaccgacgtacagcggcgtgcccaacacaagt
tacagtggcccaggacccggcatgggtataaacgccaacagtcagatgcatggacagggg
ccaagccagccttgcggcaccatgcccctgggacggatgccatcagctgggatgcagagc
agaccgtttcctggaaacatgagcagtatgacccccaattctcctggcatgtctcagcag
ggaggccccgggatgggcccacccatgccaactgtgaaccgtaaggcacaggaggcggct
gctgcagtgatgcaggctgctgcaaactccgctcagagcaggcaaggcaattttcctgcc
atgaatcagagcggcatcatgggatccagctccccctacactcagccgatgaacaacagc
tctggcttgatgaacccgcaggctcctccttacagcatgacacctaacatggtgaacagt
tcaacagcacctatgggtcttgcagatatgatgacacccggtgagtccaaactacccctt
cctctcaaagcggacggcaaggaagaaggacccgcccagcccgagagcaagtcaaaggat
agctacagctctcagggtatttctcagcccccaaccccaggcaacctgccagtcccttcc
ccaatgtccccaagctctgctagcatctcctcatttcatggagatgaaagtgatagcatt
agcagcccaggctggccaaagactccatcaagccctaagtcaagttcctctaccacaacg
ggagagaagatcacaaaagtctatgaactaggaaacgagccggagcgcaagatgtgggta
gaccggtacctgacattcatggaggagaggggcacacccgtggccagtctgccagctgtg
ggcaagaagcccctggacctgttcaggctctacgtctgcgtcaaagagattggaggttta
gcgcaggttaataaaaataagaagtggcgtgagctggcaaccaccttgaatgttggcact
tcgagcagcgcagccagctccctgaaaaaacaatacattcagtacctgtttgccttcgag
tgcaagattgagcgaggggaggagccccctccagaagtcttcagcactggagataccaag
aaacagcctaagattcagccgccatctcctgctaattctggttccttacaaggcccacag
actccacagtctactggtagtaattccatgacagaagtgccaggcgatttgaagccccca
acaccagcatcaacacctcatggacagatgacacctatgcagggtggcagaaacagcgca
gttagtgtgcatgatcccttttcggatgtaagtgattcagcattcccgaagcgaaactcc
atgacgccaaatgcaccataccagcagggaataaacatgccagatatgatgggaaggatg
ccatatgagccgaataaagatcctttcggtggaatgagaaaagtgcctggaagcaatgag
cctttcatgacccctggacaaatgcctaacagtggaatacaagatatgtataaccagagt
ccgtctggagcaatgtccaacatgagcatgagccagcgacagcagttctcttatggaagt
ggctatgacaggaggtcggatcatgggctgggtcctgaaggcagtatgggaccacctggt
caaagcaacatggtgccttcaaacagtgacccaagcatgtactctcctaatcattatcct
ggccagcaaaggcatgaaccatatgggcagcagtatccaggacaaggacctccctcagga
cagccaccatatggaggacatcagcctggaatgtatccacagcagcagaactataagcga
cacatggatggcatgtatgggcctccagccaaacgccatgaaggggatatgtataacatg
cagtacggcaaccagcagcaggaaatgtataaccagtacagcaacgcttacacggggcct
gacaggaggcccatgcagggacagtatccctatccgtacaacagggagaggatgcagggc
ccaggacaaatgcagcagcatggaatacctccccagatgattggtggccccatgcagtcg
tcatcctccagcgaaggtcctcagcagaacatgtggccaacacgaaatgatatgccttac
ccttaccagaataggcaaggtccaggaggccctgcacaggccccgccgtatccagggatg
aatcgcactgatgatatgatggtacctgaccagaggataaaccatgagagtcagtggcct
tctcatgtcaaccagcgtcagccttcttatatgtcatcctcagcctccatgcagcctatc
actagacctcctcagtcatcctaccagacgccaccctctatgccaaaccacatctctaga
gctccaagtccagcatccttccagcgctctttggaaaaccgtatgtctccaagcaagtct
cctttcctaccctccatgaagatgcaaaaggttatacccacagttccagtgtcacaggtc
gcaggacctccaccccaaccaccaccaattaggcgagaaattaccttccccccaggctct
gtagaagcatcccaaccagtcttaaaaccaagacgaaagattacctcaaaagatattgta
actcctgaggcctggagagtgatgatgtctcttaaatctggtcttttggctgaaagtacc
tgggcgctagacactattaatattcttctgtatgatgacagcactgtcgctactttcaac
ctctctcagttgtctggatttcttgagcttttagtagaatattttagaaaatgcctgatt
gacatttttgggatccttatggaatacgaagtgggagatccaggccacaaagcacttgat
cacaaagcagccaagaaagatgatagccagtcgttggcagaggatactggaaaagaggag
aatgacgaatgtattgactgttttgatgaagaggaggaggagggggatgatgaaaaggta
gaaggagaagaaaagagcattgttttttccactcctggtgccattgctgatccaagtgag
aggccaaaacaagccagtaaattcgacaaactgccaataaagattgtaaagaaaaataat
ctatttgttgttgaccgatctgacaaacttggacgcgttcaggaatttgatagtggactt
ctccactggcagcttggtggcggtgacacaactgaacatatccagactcattttgaaagc
aagatggagattcctccgcgcaggaaagcccctcctcccttgaactctccaagcaaaaag
aagggcctcgaggggaaaggtgaatctgaggaacagcaagacaaaagtataacagcaacc
attgatgatgtcctctcagctcggccaggagcattgcctgaagactcaaactctggttcc
caaacagagagcagtaaatttccgtttgggatccatcaagccaaaagccaccggaatatt
aaactgctagaggatgagccaaggagccgggatgagactcctctatgcaccataactcac
tggcaagactccttggccaaacgctgcatctgtgtgtcaaatatcgtccgtagcttgtct
tttgtgcctggcaatgacaccgaaatgtccaaacatccaggcttggtgctgatcctggga
aagctgatccttcttcaccatgagcatccagaaagaaagcgagcgccgcagacatacgag
aaagaggaagaggaggacaaaggggtggcctgcagcaaggatgagtggtggtgggactgc
ctcgaggtcttaagggataatacattggtcacattagccaacatttctgggcagctagac
ttgtctgcttacacggaaagcatctgtttgccaattttggatggcttgctgcactggatg
gtgtgcccgtctgcggaggcacaggatccttttccaaccgtggggcccaactcagttctt
tcgcctcagagacttgtgctggagaccctgtgtaagctcagtatccaggacaataatgtg
gaccttatcttggccacccccccattcagccgtcaggagaaactctacgctactttagtt
aggtacgttggggaccgcaaaaacccggtctgccgagaaatgtccatggcgctcttatcg
aaccttgcccagggggacacattagcggcaagggcaatagctgtgcagaagggaagcatc
ggaaacttgataagcttcctggaggatggggtcaccatggcccagtaccagcagagccag
cataacctcatgcacatgcagcctccgcctctggagccgcctagcgtagacatgatgtgc
agggcagccaaggccttgctggccatggctagagtggacgagaaccgctcagagttcctt
ttgcacgagggtcgtttgctggatatctcaatatctgctgtcctgaactctctggttgca
tctgtcatctgtgatgtactttttcagattgggcagttatga
DBGET
integrated database retrieval system
