Opisthocomus hoazin (hoatzin): 104331021
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Entry
104331021 CDS
T08436
Symbol
SLX4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
104331021 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oha04121
]
104331021 (SLX4)
03400 DNA repair and recombination proteins [BR:
oha03400
]
104331021 (SLX4)
Ubiquitin system [BR:
oha04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
104331021 (SLX4)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104331021 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
zf-C2H2_jaz
B129_C2H2-zf
zf-met
zf-C2H2_4
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
104331021
NCBI-ProteinID:
XP_009934595
LinkDB
All DBs
Position
Unknown
AA seq
1854 aa
AA seq
DB search
MDEQDNDFKELWANLLGRAKKKAGEADAAKRAQNRSKSTAARSKVRRGKAAARSQNHHRL
PAAKETNLPQDLGPKEQALVHKEGGDTVACSSGETVERDGRRSPFPASQLSTVASECSQR
ILTVNTVSGCSQTTLSFHPATQPGTCSSPTSKIPQLAGSKVRVAELVVERMQQFKRVAPE
QLKHSTDDSLPKSVALGDFPDESQEQNPPENDTHHLPSMKHDSALALVLQQXXXXXXXAS
LEDAGLFFCQICQKDLSAMNTTRREQHVNRCLDEMEEAQMLSSSKPLVPECPICGKQFQT
PQSRVSHLKRCAVEMDVPPKLLLQAVQLQVSTLGDAPLQCPSNQPNRSKRKVSSKEDSKK
MQKRAKMETKDEDLLVAMAMSRSLLEHEKQEQAKSVTNVKPVAALPIKWKPGSEKKRRKR
GPTAPPPLLLQDPEKARQRIQERVAMLLAEEMEFPPTPQLPASRILEDESGKAAWLLPLP
KAKECFLWNFSALTGPCDPESFYTAGLNPAIVPWKSVQNHKPEDVLPLVGSDQPQVSQQI
QPDLSSCEPTCTEVGGQTSDESKSGPEGDGQLLSHSQKDVQTLQDLVELAREGLTLTQWN
LDADRVQAAEQPGEELPSSDTPHSGFVPPSKEKSLLTSSCKRSSLRLLAEDFSAMVNNPH
LSDVQFQVDSGDVLYAHMFVLYARCPQAVEVVHSEGFLVEEDGNAQTRRVLLSDVSCCPR
FGARELMAKCENNTGESQASSGVDSEDDLISVRDDEDCQDRAENFQDLLKSVWDGEDEEE
VDMLNPECQKEDDNGVGEEELEEIYEFAATQRRMVQGETEANEGTDCSICSDSEAAQGTN
QQTEEEEVKRSESASVSSNFKDLKDDDDVEKSKCDSYAQEKMQSINRCKSVNAAQPTFVP
HHSEPQKWDIASHSATANEGETVRGCEGAKDSKLSQVSRDGADHHEKQFSSFHGDTNINE
SYERLFSATQGDHCEPFPVKEVIRESGKGPSEKHVDVSDSLLYSKSQKDLSPRRNSFYGS
PAPKPCVPLFPAVGSSPASPKSDREFAGEHVSTPKQNKREKSFPADEIPFQKANELDTAS
RNENTVSPAELPNIDLNKCAHVPALSSLVIRTQGAAAQGNKEGDVIVLSSDDEMELQEDN
KSPEPSSALKEMEIPEKLKCTSVEQGPEIPKPEPNSSVTETEQRSTQISGDIMHTMHVSN
DVTMSTELALSRQIDACMERKQSPDLSPEKRLSHEVSAGTDSSWLVPDTLVLSKSRSFST
QTHVTSINSLRSPGSKLSTKNLAAGNSNHEMAGNLIKVRETTSSAKRLPMENSVSERSLP
SSPAAGSFSENYPPVSPVDPVLHSPGHTNIKSNCVEISLLSRPVSPCHEQPLEDKTDNSV
VEVDDSEKEISLPSVSSSVLLCDEPPMPVDDCWHFEYLSPVRGNGQDSGQVRRAGTSTAS
SPRPGSWHDQWASPVHAQEIKGSTPLRGSPVGRRTTLLCVEKSPTEACSSVGGRPSYLNS
KLWDDWNGEEEEVEFPEMLPLSQRLSAAAGACQTDPGKTPEPSCRENDKPPSTPVTPMPA
YSLMETPQLKKELSRFGVRALPKRQMVLKLKEIFQYTHQDVDSDFEDEIPSSQPPPQKSP
AKHSGQSKADRTAGGKRANASRAVGKRKQAATASSVLPVRNTDDDRGGSRETGCAAPKEG
TKLTHHPEGAKEQKRSSGSPERWSLAAGPEEPMLSTSQESAVSSVDGSDISFGSQSSFIN
GFEACAFASEEEEEELAASQAAAREEEKLEAVRCYIRSNTALYHKVLFYEPIELAELHAE
LKQNGIKISQAKLLDFLDAHCITFTTARARKEKEKKKGNKKQRRRYXMEPTPPP
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcgaatcttttgggtagagcaaag
aaaaaagctggggaggcggatgcagcaaagagggctcagaacaggtcaaagagcactgca
gcaagaagcaaagtaagaagaggtaaagctgctgctaggagtcaaaaccatcatcgctta
ccagcagcaaaggaaacaaacttgcctcaagatttgggtccaaaggagcaagcattggtg
cacaaagaaggtggagacactgtggcctgtagtagtggtgagactgtggaaagggatgga
agaagaagccctttccctgcaagccagctaagtacggtggccagtgagtgtagccagagg
attctgacagtaaatactgtgagtggctgttcccagactacactatccttccatcctgct
acacagccagggacctgctcttcacccacctcaaagataccgcagcttgcagggtcgaag
gtgcgggtggcagagctggtagtggagagaatgcagcagttcaagagagtggcacctgag
cagctaaaacacagcacagatgacagcttgccaaagtctgtagccctcggggatttccct
gatgaaagccaggagcagaacccaccagagaatgatacccaccatcttccatccatgaag
catgacagtgctctggctttggttcttcagcagnngnnnnnnnnnnnnnnnnnggcaagc
ctggaggatgcaggcttgtttttttgtcagatctgccagaaggatctctcagccatgaac
acaacgcgacgagagcagcatgttaacaggtgtttggatgagatggaagaagcacaaatg
ttgtcctccagcaaaccactggtccctgagtgtcccatctgtgggaagcagttccaaacc
ccacagagcagagtcagtcacttgaagcgctgtgcggttgagatggatgttcctcctaag
ctgcttcttcaggcggtgcagttgcaggtgtccacactgggtgatgcacctcttcagtgt
cccagcaatcaaccgaacaggtcaaagcgaaaagtctcttccaaagaggactcaaagaaa
atgcagaagagggccaaaatggagacgaaggatgaagatttgctggttgctatggcaatg
tcacgctccctgttggagcacgaaaagcaggagcaagccaaatcagttacaaatgtgaaa
ccagtggctgctttgccaatcaaatggaagccaggatcagagaaaaaacgacgtaaaaga
ggcccaactgcacctccaccattactacttcaggacccagagaaggcccgccaaaggatc
caagagcgagtagctatgctgcttgcagaagagatggaattccctcccacccctcagctt
cctgctagtaggattttggaggatgaatctgggaaagcagcctggctcttgccattgccc
aaagctaaggagtgctttttatggaatttcagtgctctgacagggccctgtgaccctgaa
tcattctacactgctggattaaaccctgcaattgtaccttggaagtctgtgcagaatcat
aagccagaggatgttctgccattggtgggatctgaccagccacaagtatcccagcaaatt
cagcctgacctcagttcttgtgagcccacttgcacagaggttggaggtcaaacttctgat
gaatccaagtccggccctgaaggagatggacaacttttatctcacagccagaaggatgtt
cagaccctacaggacctagttgagttggccagggaaggacttaccctcactcagtggaac
cttgatgctgaccgcgttcaggcagcagagcagccaggagaagagctgccttccagtgat
actccacacagtggctttgtccccccatccaaagagaagagcctcctgacaagcagctgt
aaaagatcctctctcaggctgctggctgaagatttcagtgcaatggtcaacaacccccac
ttaagtgatgtccagttccaggtggactctggggacgtcctttacgcccacatgtttgtg
ttgtacgcacggtgtccgcaggccgttgaggtcgttcacagcgaagggttcttagtggag
gaggatgggaacgcgcagacacgccgtgtgctgctgagtgacgtgagctgctgccccagg
tttggtgcgagggaactgatggcaaagtgtgaaaacaacacgggagagagtcaggcgtct
tctggagtggattcagaagatgatcttatctctgtgagggatgacgaagattgtcaggac
agagctgagaatttccaagacctcttgaagtcagtgtgggatggtgaagatgaggaagaa
gtagatatgctgaaccctgaatgccagaaggaagatgacaatggggtgggtgaagaggag
ctggaggaaatctatgagtttgctgcaactcagaggaggatggttcagggtgagacagag
gcgaacgagggaacagactgcagcatctgcagtgattctgaggcagcccaaggcacaaac
cagcaaactgaggaggaagaggtaaagaggtcggaatctgcttcagtaagcagcaacttc
aaagatttgaaggatgacgatgatgtggaaaaatctaaatgtgactcgtatgcacaagag
aaaatgcagagtataaataggtgcaagagcgtgaatgctgcacagcccacttttgtgcct
caccacagtgaacctcagaaatgggacatagcatcccacagtgccaccgctaatgaagga
gagaccgttaggggttgtgaaggtgcaaaggattccaagttatctcaggtctcacgtgat
ggggcagatcaccatgaaaaacagttttctagcttccacggtgatactaatataaatgaa
agttatgaacgcttgttttctgcaactcagggagatcactgtgagcctttcccagtgaaa
gaagttatcagagaatcaggaaagggtcctagtgaaaaacacgttgatgttagtgattca
cttctgtacagcaagtcacaaaaagacctctctccacgtaggaacagtttttacgggagt
cctgctcccaagccttgtgtgcccctttttcctgctgttggctcttcacctgcatctcca
aaatcagacagagagtttgccggagaacatgtgtcaacaccaaagcaaaacaaaagggaa
aaatcattcccagctgatgaaataccctttcagaaagccaacgagctggataccgcatca
agaaatgagaacacagtttctccagcggagcttcccaacattgatttaaacaagtgtgca
catgtcccagcgttgtcatcactggtcatcagaactcagggtgctgcagctcaggggaac
aaggagggtgatgttattgttttatcttctgatgatgaaatggaattacaagaagacaat
aagtcaccagagccaagctctgccctgaaagaaatggaaatccctgagaaactgaaatgt
acaagtgtagaacaaggtcctgagataccaaaacctgaacctaactcatcagtcactgaa
acagaacagagatctacccagatctcaggtgacattatgcatacaatgcatgtaagtaat
gatgtaacgatgtccaccgaattggctctcagcagacaaatagatgcttgtatggagaga
aaacagagtccagacctgagccctgaaaaaaggctcagtcatgaagtgtctgcgggtaca
gacagctcctggctcgtgccagacacactggttctgagcaaaagcagaagtttctcaaca
cagactcatgtcacaagtataaattctttaaggagtcctggatctaaactcagcacaaag
aacttagcagcaggtaacagtaaccatgaaatggctggaaatttaataaaagttcgtgaa
acaacatcgtcagctaaacgtttgcctatggagaactcagtcagtgagagaagcctgccc
agcagcccagcagcaggatcattttcagagaactacccaccagtttctccagtggatcca
gttctccactcccctggccacaccaacataaaaagtaactgtgtcgagatctcattgtta
tccagacctgtgtctccgtgccatgagcagccattggaagataaaacagataacagtgtg
gttgaggtagatgacagtgaaaaggaaataagtctgccttctgtgagcagcagcgtcttg
ctttgtgatgagcccccaatgcccgttgatgactgctggcatttcgagtatctgtcacca
gtccgaggtaacggccaggactccggccaggtcaggcgtgcagggaccagcactgccagc
agccccagacctggttcttggcatgaccagtgggcgagccccgtccacgcgcaagaaatt
aagggcagtactcctctgcgaggaagtcctgttggcagaagaacaactttgctctgtgtt
gaaaagagtcctactgaggcatgttcatcagtgggcggcagaccgagttacctgaactcc
aaactctgggatgattggaatggagaagaggaggaagttgaattcccagagatgcttcct
ctgtctcagagattgtcggctgcagcaggggcctgtcagacagatcctggaaagactccc
gaaccttcctgtcgggagaatgacaagcctcccagcactccagtgacaccaatgccagct
tactccctgatggagaccccacagctgaagaaggagttgagcagatttggagttcgtgct
ctccctaaacgccagatggtgttgaagctgaaggagattttccagtatactcaccaggac
gtggactctgactttgaggatgaaatcccatcttcccagcctcccccgcagaagtccccg
gccaaacactctgggcagtcaaaggcagaccgcactgcaggtggaaagcgtgccaatgcc
tcgagggctgtgggcaagaggaagcaggctgctacagcttcttcagtgctccctgtgagg
aacactgatgatgaccgtggtggatcccgtgaaacaggctgtgcagcacccaaggaggga
actaaactgacacatcacccagaaggagctaaagagcagaaaaggtcatctggatctcca
gagagatggtctctggcagctggtcctgaggaaccaatgttgtcaacatctcaggagtcc
gcagtttcttcagtggatggaagcgacatctcttttggttcacagagttctttcattaat
ggatttgaagcctgtgcttttgcatccgaagaggaggaagaggagcttgcagcatctcag
gcagcagctcgggaagaagaaaagctggaggcagtaaggtgctacatccgttcaaacaca
gccctgtaccacaaggttctcttttatgagccaatcgagctggctgagctgcacgcagag
ctgaaacagaacggcattaaaatttcccaggcaaagctgctggactttttagatgctcac
tgtatcacatttaccacggccagagcccggaaagagaaggaaaagaagaaggggaacaaa
aaacagaggagacgatactgaatggagcccactcctccaccctga
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integrated database retrieval system
