Opisthocomus hoazin (hoatzin): 104331948
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Entry
104331948 CDS
T08436
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104331948 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oha03400
]
104331948 (MSH6)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104331948 (MSH6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
WPP
Autoind_bind
Motif
Other DBs
NCBI-GeneID:
104331948
NCBI-ProteinID:
XP_009935608
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MEGYPWWPCLIYNHPTEKTIVRGKGKSTRVHVQFFDDSPTRGWVSIKYLKPYKGSSDEET
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEETEMSESASGN
SENCNSEEDVKTNKRVASRESAVKAKRRRVLDSDSDHDGSDVEFKPDVKEVASSEEASSG
VDENESTDTETDSESVAESPVKVPSKRKRGEISKPAKRSSLENERSEMPKKAATLSLEAK
SKLTSFAAPESFESQASACSGGMGGFAVWEHEKIDWLQEGKKKDAHRRRQSDPGYDPCTL
YVPEDYLSKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGTW
AHSGFPETAFGRYSDVLVQKGYKVARVEQTETPEMMETRYKSMAHPTKFDKVVRREICRI
ITKGTQTYSVLDCDPSENHSKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDRH
CSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLIAGSQFWNASKTLKVLL
EEGYFKEKQNSEDGCSLPAVIKSLTSESDSLGLTPGDNSELALSALGGCVFYLKKCLIDQ
ELLSLANFEEYVPVDIDSAKTTSSSSFFARTDQRMVLDGVTLMNLEVLQNGTNGTTEGTL
LERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPHKMSEVSEHLKKLPDL
ERLLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKIADFLSALEGFKVMNEVVDVMEEI
ASDFKSKVLKQLVTRRDRNPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDYD
KALQDIKVVEEDLHKYLDKQRKLLGFKSVLYWGAGKNRYQMEIPESVVSRNLPEEYELKS
TRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLD
VLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIGS
KDEDSSTEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLG
ASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAEK
IRCRTLFSTHYHSLVEDHAHSAAVRLGHMACMVENESEDPSQETITFLYKFTQGACPKSY
GFNAARLANIPEEVIQKGHRKAKEFEKITISLRIFRYLCLVLDGATSDANAVQKLTAMIS
HL
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccgtgtctgatatacaaccatccgacggaaaaaacgata
gtcagaggaaaagggaaatccactcgtgtccatgtgcagttttttgatgacagccctaca
aggggctgggtcagtattaaatatctgaagccatataaaggctcatcagatgaggagaca
ctgaagggaggtatgttttacagtacaaagcctgaaattaaacgagcaatggtgttagcg
gacgatgcgatgagtaaagataaaactaagcggcttgaactggcagtatgcagtgaacca
tcagacactgaggaggaagaggaggaagaaacggagatgagtgaaagtgcatcaggcaac
agtgaaaactgcaacagtgaggaggatgtgaagaccaataagcgagtagcgagcagggaa
agtgccgtaaaagccaaaagaagaagagtgttggattctgacagtgatcatgatggctct
gatgtagagttcaagcctgatgtgaaagaagtggcaagcagcgaggaagccagtagtggg
gtggatgaaaatgaatctactgacacagagacagactcggagagtgttgcagaaagtcct
gtaaaagtcccttctaaacgaaagagaggagagataagcaagcctgctaaaaggagtagc
ttagaaaacgaacgttctgagatgcccaaaaaagcagcaacgctttctttggaagccaag
tctaagctgacctcgtttgcagcacctgagagttttgaatctcaagcaagtgcttgcagt
ggaggcatgggtggcttcgcggtatgggaacacgaaaaaattgattggctgcaggaaggg
aaaaagaaagacgcgcacaggagacggcagagtgaccctggttatgacccgtgtactctg
tatgtacctgaggactatctcagcaagtgtacgccaggcatgcggaggtggtggcagctg
aaaagccaaaactttgatgctgtgattttctacaaagttggaaaattctatgagttgtat
catatggacgcagtcactggcgtaaacgagttgggcctgatcttcatgaagggtacttgg
gcccattctggttttccagaaactgcgtttggcagatactctgacgttctggtgcagaag
ggctacaaggtggcccgtgttgagcaaacagaaactcccgagatgatggaaacgcgctac
aagtcaatggcccacccaacaaaatttgacaaggttgtacgccgagaaatatgcagaatc
atcaccaaaggcactcagacttacagcgttctggattgtgatccctctgagaatcatagc
aaataccttctgtgcgttaaggagaaagaagactcctctggacaacgtgtttatggggtc
tgctttgttgacacatcggtggggaagttttacgtaggccagttctcagacgaccggcac
tgttcgaggtttaggacgttggtagcgcattacactcctgtgcaggtactgtatgagaag
gggaacctgtctgtggacacacagaagatcctgaagggctcgcttgtttcttgcattcag
gaagggctgatcgctggttcccagttctggaatgcatctaaaacactaaaagtccttctt
gaagaaggatatttcaaggagaaacagaactctgaagatggatgttctctgcccgctgta
attaaatctctgacttcagagagcgactcgctgggattaactcctggtgacaacagtgaa
ttagctttgtcagctcttgggggatgtgtcttctatctcaaaaagtgtctgattgatcag
gagctgttatcgctggcaaacttcgaggagtatgtccctgtggatattgatagtgcaaaa
actacgagttcaagcagtttctttgccagaactgaccagcggatggtgctggacggagtc
accctgatgaacttggaagtcctgcagaacggaaccaatggaaccacagaaggtactttg
ttggagaggattgattcttgctgtacgccatttgggaagcgtctcctgaaacagtggctc
tgcgctccgctttgtaatccgaagtccatcaacgatcgtttagatgctgttgaggacctc
ctggcagtgccacataaaatgtctgaagttagtgagcacctgaagaaacttcctgacctt
gaaaggctgctcagcaaaattcacagtattggatcaccacttaaaagtcagaaccatcct
gacagcagggccatcttttatgaagaactcaaatacagcaaaaaaaaaattgctgacttc
ttgtctgcactggaggggtttaaagtaatgaatgaagtcgtcgatgtcatggaagaaatt
gccagtgacttcaagtctaaagtccttaagcagctcgtcacccgcagagacagaaatcca
gacggccgcttcccagacttgagtgcagagctgaaaagatgggatactgcttttgatcat
aaccaggctcgaaagacaggagtgatcactccaaaggcgggctttgaccccgattatgat
aaagcactacaggatattaaagttgttgaggaagatcttcacaaatacctggacaagcaa
cgcaaactgcttggattcaaatccgtgctgtactggggggcaggcaaaaaccgataccaa
atggaaataccagaaagtgtagtatcacgtaatttgcctgaggaatatgagttgaagtca
accaggaaggggtataagcgctactggaccaaggagatcgagaagatgctggctgcaatg
gttaacgctgaggagcgcagagatgcggcactaaaagactgcatgaggcgtttgttttac
aactttgataagaacagcaaagactggcagacagctgtggaatgcattgctgtgttagat
gtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacctgta
attctactgcctgtggatagtgctcctcccttcctggaacttaaaaattcacgccatcca
tgcattacaaaaactttctttggggatgattttattcccaatgacatcgtgataggcagc
aaagatgaagatagcagtactgaagcttcctgtgtgttagtaactggtccgaatatgggt
ggcaagtctacacttatgagacaggctggtctcctagttataatggctcaattgggatgc
tacgtacctgctgaagcctgcaggcttacaccgattgacagggtctttacaaggcttggc
gcctcagacagaattatgtcaggcgaaagtaccttctttgtggaattgagcgagacctcc
agcattctccagcatgcaacagagcactcccttgttcttgtggatgaactgggcagaggc
acggctacttttgatgggacagctatagcgagcgcagttgtgaaagaactcgctgagaaa
atccgttgtcggaccctgttctccacccactaccactcgctggtggaggatcacgcgcac
agcgcggctgtgcgcctcggccacatggcatgtatggttgaaaatgagagtgaagatcca
agccaggaaacaattacgttcctgtacaagttcactcaaggagcatgtccgaagagctat
ggcttcaatgcagcgagacttgctaatattcctgaggaagttattcagaaggggcacaga
aaagcaaaagagtttgaaaaaattaccatttcactgagaatatttaggtatctgtgcctg
gtgctggacggtgccacaagcgatgccaacgccgttcagaaactgactgcaatgatcagt
catctttaa
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