Opisthocomus hoazin (hoatzin): 104332494
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Entry
104332494 CDS
T08436
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104332494 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oha03041
]
104332494 (SF3B1)
03036 Chromosome and associated proteins [BR:
oha03036
]
104332494 (SF3B1)
Spliceosome [BR:
oha03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104332494 (SF3B1)
Complex B
104332494 (SF3B1)
Complex C
U2 SnRNP specific factors
104332494 (SF3B1)
Chromosome and associated proteins [BR:
oha03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104332494 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
104332494
NCBI-ProteinID:
XP_009936213
LinkDB
All DBs
Position
Unknown
AA seq
1339 aa
AA seq
DB search
MDLLESLCCAGFRGELDVPGGRVQHVVVASSVRILSSHEFKADSESCYIEAQIREIQGKK
PALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYPSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKKHRRMMIISPERLDPFADGGKTP
DPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAASQPPSKRKRRWDQTA
DQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAG
AATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGE
TPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQA
WRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFH
MQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIK
NGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDD
LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVR
NTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRS
LVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAA
FLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANY
IKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYR
KMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRV
KPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEE
YPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR
GAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE
RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY
IYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPH
VIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYP
RIYNDEKNTYIRYELDYIL
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggacttactggaatccctgtgctgtgcaggatttcggggggagctggatgtacctggg
ggcagggttcagcatgtagtggtggccagcagtgtaaggattttgtcttctcatgagttc
aaggcagatagcgagagttgctatattgaagcacaaattcgagaaattcaaggaaaaaag
cctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgatcaagaa
atttatggtggcagtgacagcagatttgctggatatgtcacttctattgcagcaactgaa
ttggaagatgatgatgatgactacccttctacaagtttgcttggccagaagaagccgggg
taccatgctccagtggcattgcttaatgacataccccagtctactgaacagtatgatcct
tttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaagcacagg
cggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaagacacca
gatcctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcatttgacaaaa
gaagagagggaaattaggcaacagctagctgaaaaagctaaagctggagagcttaaagtc
gtcaatggagccgcatctcagccaccttcaaaacgcaaacggcgttgggatcagacagct
gatcagactcctggtgctacacctaaaaaattatccagttgggatcaagcagagactcct
ggccatacgccgtctctgcggtgggatgaaactccaggccgtgcaaagggcagcgagact
cccggtgccaccccaggctcgaaaatatgggacccgactcccagtcacacaccagcggga
gctgcgacacccggacgggacacgcctggtcacgcaacgccaggccacggaggtgccact
tccagcgcacgtaaaaatcgatgggatgaaacacctaaaacagaaagagatactccagga
catggcagtggatgggctgagacgcctcgtacagatagaggtggcgactccattggtgag
acgccaaccccgggagcaagcaaaaggaagtcgcgatgggatgaaacacctgctagccag
atgggtggcagcactcccgtcctgactcctggcaaaacacccatcggtacaccagccatg
aacatggcaacgcctacaccaggtcatatcatgagcatgactcctgaacagctgcaggct
tggcgttgggaaagggaaattgatgagagaaacagaccactttctgatgaagaattggat
gctatgtttccagaaggatacaaggttcttcccccaccagctggttatgttcctattcgc
actccagctcgtaagcttacagcaactccaacccctttgggtggtatgactggattccac
atgcagacggaagaccggactatgaagagtgttaatgaccagccatctggcaatcttccg
ttcctaaaaccagacgacatccagtactttgacaaactgctggttgatgttgatgaatca
actctgagtcccgaagaacagaaggagagaaaaataatgaaattacttttgaaaataaag
aatggcacgcctcccatgagaaaggctgcgttgcgacaaattactgataaagcccgggaa
tttggagcagggccgttgtttaatcagattctgcctctgctgatgtcaccaacgcttgaa
gatcaggagcgtcacctgcttgtcaaagtcatcgacagaattctttacaaactggatgac
ttggtgcgaccatacgtacacaagatccttgttgtcattgaaccactgctgattgatgaa
gactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggctgctggt
ttggcaacaatgatctccaccatgcgacccgatattgacaatatggatgaatatgtccga
aatacaacagctcgagcctttgctgttgttgcctctgctttgggcattccttctctgtta
cccttcttgaaagctgtctgtaaaagcaaaaaatcgtggcaggctaggcatactggcatc
aagattgtgcagcagattgctattctgatgggttgtgctatcttgcctcatctcaggagc
ttggttgaaattattgaacacggtctggtggatgagcagcagaaagttcgcaccatcagt
gctttggctattgctgctttggctgaagcagctactccctatggtattgagtcatttgat
tctgttctgaagcctttgtggaagggtatacgtcaacacagaggaaagggtttggctgcc
ttcttgaaggctattggttacctgattccgctcatggatgccgagtatgcaaactattat
accagagaagtcatgctaatccttatcagagagttccagtctcctgatgaagagatgaag
aaaattgtgttgaaggtggtaaagcagtgttgtggtacagatggtgttgaagcaaactac
attaaaacagaaatcttgccaccttttttcaaacacttctggcagcacagaatggcattg
gacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaagttgga
gcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcagtacaga
aaaatggtcatggaaacaattgagaagataatggggaatctgggggcagcagacattgat
cacaaactggaagaacagcttattgatggtatcttgtacgcctttcaggagcagaccaca
gaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaaagagtt
aaaccctacttgccacagatctgtggtaccgttttgtggcgtttgaacaacaaatcagct
aaagttaggcaacaggctgctgacctgatctctcgtactgcagttgtcatgaagacttgt
caagaggaaaaactgatgggacacttgggtgttgtgttgtatgagtacctgggtgaagaa
tatcctgaagtactgggcagcatactgggggcactgaaggctattgtcaatgttataggt
atgcacaagatgacgccaccaatcaaagatctgctgccacggcttacgcctattttgaag
aacagacacgagaaagtgcaggagaattgtattgatcttgtcgggcgcattgcagaccga
ggtgcggagtatgtttctgcgagagaatggatgaggatctgctttgaactgcttgaatta
ctaaaagctcacaagaaagctatccgaagagccaccgtgaacacttttggttatattgcg
aaagctattgggcctcacgatgtattggctacactgctaaataacctgaaagtacaggag
aggcagaacagagtatgtacgacagtagcaattgctatcgtcgctgaaacatgctcgcct
ttcacagtgctgcctgcgctcatgaatgagtacagagtcccagaactgaatgtccagaat
ggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaagattac
atttatgctgttacaccgttgcttgaagatgctttgatggacagggatcttgtacacaga
caaacagccagtgccgtggtgcagcacatgtctcttggtgtttatgggtttggctgtgaa
gactcccttaatcatctgttaaattacgtatggcccaatgtgtttgaaacctctcctcac
gtcattcaggcagttatgggggctctggagggcctccgagttgctatcggtccctgcaga
atgttgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagacgtttat
tggaagatctataactcaatctacatcggatcgcaggatgctctgatagcacattaccca
agaatctataacgatgaaaagaacacctatattcgttatgaacttgattacatcttataa
DBGET
integrated database retrieval system
