Opisthocomus hoazin (hoatzin): 104332805
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Entry
104332805 CDS
T08436
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104332805 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oha03041
]
104332805 (PRPF8)
Spliceosome [BR:
oha03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104332805 (PRPF8)
Complex C
U5 SnRNP specific factors
104332805 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PRO8NT
RRM_4
PROCT
JAB
Motif
Other DBs
NCBI-GeneID:
104332805
NCBI-ProteinID:
XP_009936550
LinkDB
All DBs
Position
Unknown
AA seq
2226 aa
AA seq
DB search
MTCALKYMPHAVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGSM
WIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQLELDPEEDAPVLDWF
YDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSK
ALNMAIPGGPKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHV
HLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPF
LKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSY
QKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLL
IHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLG
NVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGC
GFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRA
AVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKA
DWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAV
AVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLI
EQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLW
YEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDVWETSEGECNVMLESRFEKMYEK
IDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLV
MDLLVLGLHRASEMAGPPQMPNDFLSFQDIATEVAHPIRLFCRYIDRIHIFFRFTADEAR
DLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTT
VQWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQ
CFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDL
LVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTD
VGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLED
LEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNL
NNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLN
QIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHE
SIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLAD
SKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDL
AYNLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQN
YGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVW
AGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGS
ELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNN
DRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEI
RDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTF
SSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGY
LYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQ
LSPQDVTTHAKVMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNN
PKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWNYNFMGELPRGGRWRGWLGEETEVAPRG
SVPARP
NT seq
6681 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgtgctctgaagtacatgcctcatgctgttctgaagctcttggagaacatgccc
atgccctgggagcaaatcagggatgttccagtcttgtaccatatcacaggcgccatctct
tttgtgaatgagattccctgggtcatagagccggtgtacattgctcagtgggggtcaatg
tggattatgatgaggcgagagaagagggacaggcgtcacttcaagaggatgagattcccc
ccgtttgatgatgaagaaccccctctggattatgctgataacatcctggatgtggagccc
ctggaagcgattcagcttgagctggatccagaggaggatgcccctgtgctggactggttc
tacgaccaccagccactgaaagacaacaggaagtacgtgaatggctcaacataccagcgt
tggcagttcactctcccgatgatgtccacgctgtaccggctggccaatcagctgctcact
gaccttgtggatgacaactacttctatttgtttgacctgaaagcgttctttacctccaag
gcactgaacatggctattcctggaggtcccaagtttgagcctcttgttagagacatcaat
cttcaggatgaagactggaacgaatttaatgacatcaacaaaattatcatcaggcagccg
atcaggacagagtacaaaatcgctttcccgtacctgtacaataacctgccacaccatgtc
cacctgacctggtatcatactccaaatgtcgttttcattaaaacagaagatcctgatctc
ccagctttttacttcgatccactgatcaaccccatttcacacagacattctgtcaagagt
caggaaccgttgcctgatgatgatgaagagtttgagttgccagaatttgtggaacctttc
ctgaaggataccccgctctacacagataacacagccaatggcattgccctgctgtgggcc
ccgcggcccttcaacttgaggtctgggaggactcgaagagctcttgatatcccactggtc
aagaactggtatcgtgagcactgcccagcaggccagccagtgaaagtgcgagtctcctat
cagaagctattgaaatactacgttctgaatgcacttaagcacagacctcccaaggcccag
aagaagcggtacctgttccgctccttcaaggctacgaagtttttccagtcgacgaagctg
gactgggtggaagtaggcctgcaggtgtgtcgccagggctacaacatgctgaacctgctg
atccacagaaagaacctgaactaccttcacttggattacaacttcaacctgaagccagtg
aagaccctcaccactaaggaaaggaagaaatcccgttttggtaatgctttccatctgtgc
cgagaggttctgcgactgacgaagttggtggtggacagccatgtccagtacagacttgga
aatgtggatgcgtttcagttggcagatggcttgcagtacatctttgcccacgtgggccag
ctgacaggaatgtaccgatacaagtacaaactgatgaggcagattcgtatgtgcaaggac
ctgaaacatctcatttactacaggtttaacacaggccctgtgggcaaaggtcctggctgt
ggcttctgggctccaggctggagagtatggctgttcttcatgaggggcatcacgccactg
ctggagcgctggctggggaatctgctggccaggcagtttgaaggccgtcactcaaagggt
gtagcaaagactgtcacgaagcagcgtgtggagtctcactttgacctggagctgagggca
gccgttatgcatgacattctggacatgatgccagaaggaatcaaacagaacaaagccaga
accatcctgcagcatctgagtgaggcctggcggtgctggaaggccaatatcccctggaag
gtgccagggctgcccacgcctattgaaaacatgatcctgaggtatgtgaaggcaaaagct
gactggtggacaaacacagctcactacaacagggagcggatccgtcggggtgccactgta
gacaaaaccgtctgtaagaagaatctgggccggttgaccagactctacttaaaagctgag
caggaacggcagcacaattacttgaaggacgggccttacatcactgcggaagaggctgtt
gcagtgtacacaaccacagtgcactggctggaaagcaggaggttctcacccattcccttc
cccccgctgtcctacaagcatgacaccaagttgctcatattagccctggagaggctgaag
gaagcttacagtgtgaaatctcgcctgaatcagtcgcagagagaagagttgggcttgatt
gaacaggcttatgataatcctcacgaagctctgtccagaatcaagcgacaccttttaact
cagagagccttcaaggaggtgggtattgagttcatggatctctacagccacttggttcct
gtgtatgatgttgagcccttggagaaaatcacagatgcttatctggatcagtacttgtgg
tatgaggctgataagcgaagactcttccctccatggatcaaacctgctgacactgaacct
cctccactgttggtgtacaagtggtgccaaggcattaataatctgcaagatgtttgggaa
acgagcgaaggtgaatgcaatgtgatgctggaatctcgctttgagaagatgtatgagaag
attgacctgacattgctcaacaggctgttgcgtcttattgttgatcacaacattgctgac
tacatgacagccaagaacaacgtggtgatcaactacaaggacatgaatcacacaaactcc
tatgggattattcgtgggctgcagtttgcatccttcattgtccagtattatgggcttgtg
atggatttgctggtgctgggtctgcaccgtgccagtgaaatggctgggcctccccagatg
ccaaatgacttcctcagcttccaagacattgccactgaggtggcccatcccattcgcctc
ttctgcagatacatcgaccggattcacatcttcttcaggtttacagcagatgaggcgaga
gacttgattcagcggtacctgacggagcatccggatcccaacaacgagaacattgtaggc
tacaacaacaaaaagtgctggccccgggatgctcggatgcgcctcatgaaacacgatgtg
aaccttggtcgtgctgtattctgggatatcaagaaccgcttgcctcgatccgtcaccacc
gtgcagtgggagaatagcttcgtatccgtttacagcaaggataaccccaatttgctgttc
aacatgtgtgggtttgagtgccgcatcttgcccaagtgccgcaccagctatgaggagttc
acccacaaggatggtgtctggaacctgcagaatgaggtcaccaaggagcgcacagctcag
tgcttcctgcgtgtggatgacgagtctatgcagaggtttcacaacagagtgagacagatc
ctcatggcgtctggctccacaaccttcaccaagattgtcaataaatggaatacagctctg
attggcttgatgacgtatttccgggaagctgttgtaaatactcaggagttgcttgatttg
ctggtgaagtgtgaaaataaaatccagactcgaatcaaaattggtctgaattccaaaatg
cccagccgttttccaccggtggtgttttacacccctaaagagctgggagggctgggcatg
ctctctatgggccacgttctcatcccgcagtctgacctgaggtggtccaagcagacagat
gttggcatcactcacttccgctcaggaatgagtcacgaggaggaccagctcatcccaaat
ttgtatcgttacatccagccatgggagagtgagttcattgactctcagagagtgtgggca
gagtatgccctcaagcgccaagaggctatagcccagaacaggcgtctgacgctggaggat
ctggaggactcctgggacaggggaattcctcgtattaacacccttttccagaaggaccgg
cataccctagcttatgacaaagggtggagagtcaggactgacttcaaacagtatcaggtc
ctgaaacagaacccgttctggtggacgcatcagcgccatgatggcaaactctggaacctg
aacaactaccgcactgatatgatccaggcacttggtggagtggaagggatcctggagcac
actctcttcaagggcacttacttccctacatgggagggtctcttctgggagaaggccagt
ggctttgaggagtccatgaagtggaagaagctgacgaatgcccagagatcgggtttgaac
caaattccaaacagaagattcaccttgtggtggtctcctaccattaacagagccaacgtc
tatgttggatttcaggtgcagctggatttgacaggcatcttcatgcacggcaagatcccc
acgctgaagatttctctcattcagattttccgagctcacttgtggcaaaagatccacgag
agcatagtaatggatttgtgtcaggtgtttgatcaagagctggatgctctggagattgag
acggtgcagaaagagacaatccatcccaggaagtcgtacaagatgaactcctcgtgtgca
gatatccttctctttgcttcctataagtggaacgtgtcgcgtccatcgttgcttgcagat
tccaaagatgtgatggacagcaccaccactcagaagtactggatagatatccagctgcgc
tggggcgattacgattcccatgatatcgagcgctacgccagagccaagttcctggactac
accacagacaacatgagtatctatccatctcccactggtgtgctgattgccattgatctg
gcctacaacttgcacagcgcttatgggaactggttccctgggagcaaacctctgatccag
caggccatggccaaaattatgaaagcaaatcccgcgctgtacgtgttgagagaacgaatc
cgcaaggggctgcagctgtactcgtctgagcccacagaaccgtacctttcctcccagaac
tacggcgagctcttctccaaccagatcatctggtttgtggatgacaccaatgtgtaccgc
gtgaccattcacaagacttttgaagggaacttgaccacaaaacccatcaacggagccatt
ttcatcttcaatcccagaactggacagctcttcctgaagatcatccatacgtccgtgtgg
gcagggcagaagcgtctgggacagctggccaagtggaagactgctgaagaagtggcggcc
ttgattcggtcgcttcctgtggaggagcagccgaagcagatcatagtgacgcggaagggc
atgttggacccactggaggtgcacttgctggatttccccaatattgtcatcaaaggctca
gagttgcagctgccattccaggcctgtctgaaagtggaaaagttcggtgatctcatcctg
aaggctaccgaaccccagatggttctcttcaatctctacgatgactggctgaaaaccatc
tcttcctacacggcgttctctcgtctgattctgattctgcgggcactacatgtgaataat
gatcgagccaaagttattctgaaaccagacaagacgaccataacggagcctcaccacatc
tggccaaccctgacagatgaggagtggatcaaggtggaggtgcagctgaaggatctcatc
cttgctgactacggcaagaagaacaatgtaaacgttgcgtccctgacacagtcggagatc
cgagacatcatcctgggcatggagatctctgccccctcgcagcagcgacagcagattgcg
gaaattgagaagcaaaccaaggagcagtcacagctgacggccacgcagacccgcaccgtt
aacaaacacggggatgaaatcatcacctctacaaccagcaactacgaaacccagactttc
tcctcgaagacggagtggcgagtcagagcgatttctgctgccaacctccacctgcgaaca
aaccacatctacgtgtcgtcagacgatataaaggagacgggctatacctacatccttccc
aagaacgtgctgaagaaattcatctgcatttcggatctgcgggcccagattgcaggttac
ctgtatggagtgagccctcccgataacccccaagtgaaggagatccggtgcattgtgatg
gtgccgcagtggggaacgcaccagacggtgcatctcccggggcagctgccgcagcacgag
tatctcaaggaaatggaacctctggggtggattcacacccagccaaatgagtcccctcag
ctctcgccgcaggatgtcaccacccacgccaaggtcatggctgacaacccctcctgggac
ggggagaagaccatcatcatcacctgcagttttacaccgggctcctgcacgctgacggcc
tacaagctgaccccgagcggctacgagtggggcaggcagaacacggacaaggggaacaac
cccaagggctacctgccatcccactacgagcgcgtgcagatgctgctctcggatcgcttc
ctcggcttcttcatggtcccagcgcaagggtcctggaactacaacttcatgggtgagctg
ccccggggagggaggtggcgggggtggcttggggaggagacggaggtggctcctcgggga
agcgttcctgcccgtccctag
DBGET
integrated database retrieval system
